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Frequently asked questions

IMGT/StatClonotype


How can I update 'IMGTStatClonotype' R package?
To update IMGTStatClonotype' R package, you can follow steps described here.
Where can I find the 'stats_xxx' files for IMGT/StatClonotype inputs?
IMGT/StatClonotype works only with uploaded files (.txt format) from the IMGT/HighV-QUEST statistical analysis output ('stats_xxx' file available in 'data' directory of the IMGT/HighV-QUEST statistical analysis output where 'xxx' is the batch name and the locus type) (IMGT/StatClonotype Documentation).
To get these files, you therefore need to launch the IMGT/HighV-QUEST statistical analysis (IMGT/HighV-QUEST Documentation).
The files uploaded (for set 1 and set 2) in IMGT/StatClonotype should have 26 columns:
"cdr3aa", "expid", "clonoIndex", "onecopy", "morethanone", "total", "indexes", "vgene", "vallele", "dgene", "dallele", "jgene", "jallele", "cdr1", "cdr2", "gcdr1", "gcdr2", "pid", "length", "c104", "f118", "anchors", "seqid", "functionality", "sequenceFileNumber", "sequenceClonoFileNumber".
You can find files examples here.