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IMGT-ONTOLOGY and IMGT Scientific chart rules and examples in ImmunoGrid

Marie-Paule Lefranc, Véronique Giudicelli, François Ehrenmann and Patrice Duroux
CNRS, IMGT, Montpellier

IMGT-ONTOLOGY IMGT Scientific chart rules ImmunoGrid deliverables Examples in ImmunoGrid
AXIOMS IDENTIFICATION Keywords D1.2 Scientific chart rules and ontologies report (PU) IG, TR, MHC and RPI nucleotide and amino acid sequence, and 3D structure identification
DESCRIPTION Labels
CLASSIFICATION Nomenclature
IG, TR, MHC and RPI nucleotide and amino acid sequence, and 3D structure description
IG, TR, MHC and RPI gene and allele names
NUMEROTATION Unique numbering D1.3 IMGT unique numbering and controlled vocabularies report (PU) IMGT Colliers de Perles for V-DOMAIN and V-LIKE-DOMAIN
IMGT Colliers de Perles for C-DOMAIN and C-LIKE-DOMAIN
IMGT Colliers de Perles for G-DOMAIN and G-LIKE-DOMAIN
CONCEPT Interaction pMHC contact sites D1.4 New concepts of interaction and localization and deduced IMGT Scientific chart rules report (PU) pMHC interactions
IMGT Residue@Position
TR/pMHC interactions
IG/antigen interactions
IgSF and MhcSF domain interactions

The corresponding controlled vocabulary and rules are available in the IMGT Scientific chart at http://www.imgt.org