Proteins with known 3D structures
Identification and Colliers de Perles: Human Immunoglobulins
Overview table Identification of the genes and alleles involved in the rearrangements and expressed in the variable regions Protein display of the Ig V-D-J and V-J-REGIONs

Click here to see: Part 1 - Human Ig heavy chains associated or not to a kappa or lambda chain
Click here to see: Part 3 - Human Ig lambda chains associated or not to a heavy chain

Part 2 - Human Ig kappa chains associated or not to a heavy chain
Reference of this table: Ruiz, M. and Lefranc, M.-P., Immunogenetics, 53, 857-883 (2002) PMID:11862387, LIGM:259

Updates from 09/05/2001 are available in IMGT/3Dstructure-DB. IMGT/3Dstructure-DB entries (cards) are identified by the PDB code.
Click on a PDB code to get the corresponding IMGT/3Dstructure-DB card.
Click on a PDB chain name to get the corresponding Protein display.
Click on the CDR-IMGT lengths to get the corresponding Collier de Perles.

The gene identification was automatically determined by comparing PDB amino acid sequences with the IMGT reference directory translated sequences, using the stand-alone BLAST program.

Protein name  PDB code Heavy chain Kappa chain
PDB chain name IGH V-D-J-REGION IGH C-REGION PDB chain name IGK V-J-REGION IGK C-REGION
IGHV gene and allele name IGHD gene and allele name IGHJ gene and allele name CDR-IMGT lengths GHC gene name Exons IGKV gene and allele name IGKJ gene and allele name CDR-IMGT lengths IGKC gene name
17B 1g9m H IGHV1-69*02 or IGHV1-69*04   IGHJ1*01 [8.8.21]  IGHG1   CH1 L IGKV3-15*01 or IGKV3D-15*01 IGKJ2*01 [6.3.11]  IGKC 
1g9n H L
1gc1 H L
3D6 1dfb H IGHV3-9*01   IGHJ3*01 or IGHJ3*02 [8.8.19]  IGHG1   CH1 L IGKV1-5*03 IGKJ3*01 [6.3.7]  IGKC 
1obe H L
9E 1dx3 H IGHV7-4-1*02   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.8.9]      L IGKV3-11*01 IGKJ1*01 [6.3.10]   
Bre 1b0w               A IGKV1-33*01 or IGKV1D-33*01 IGKJ2*01 [6.3.9]   
1b0w   B
1b0w   C
1bre   A
1bre   B
1bre   C
1bre   D
1bre   E
1bre   F
1qp1   A
1qp1   B
1qp1   C
Fab-12 1cz8 H IGHV7-4-1*02   IGHJ2*01 [8.8.16]  IGHG1   CH1 L IGKV1-33*01 or IGKV1D-33*01 IGKJ1*01 [6.3.9]  IGKC 
1cz8 Y X
HULYS11 1bvk B IGHV4-59*01 or IGHV4-59*02   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.7.10]      A IGKV1-27*01 IGKJ1*01 [6.3.9]   
1bvk E D
1bvl A B
1bvl C D
Iga1 1iga A IGHV1-3*01   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.8.14]  IGHA1   CH1 CH2 CH3 C IGKV1-13*02/1D-13*02 IGKJ4*01 [6.3.9]  IGKC 
1iga B D
IgmRf2A2 1dee B IGHV3-30*18   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.8.14]  IGHM   CH1 A IGKV1-39*01 or IGKV1D-39*01 IGKJ1*01 [6.3.9]  IGKC 
1dee D C
1dee F E
Kau Cold Agglutinin 1qlr B IGHV4-34*01 or IGHV4-34*02   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.7.14]  IGHM   CH1 A IGKV3D-20*01 IGKJ4*01 [7.3.9]  IGKC 
1qlr D C
Len (mutant) 3lve               undefined IGKV4-1*01 IGKJ2*01 [12.3.9]   
4lve   A
4lve   B
Len 1lve               undefined IGKV4-1*01 IGKJ2*01 [12.3.9]   
2lve   undefined
5lve   A
M4L/Y(27D)D/Q89D/T94H Mutant Of Len 1eeu               A IGKV4-1*01 IGKJ2*01 [12.3.9]   
1eeu   B
M4L/Y(27D)D/T94H Mutant Of Len 1eeq               A IGKV4-1*01 IGKJ2*01 [12.3.9]   
1eeq   B
Mak33 1fh5 H IGHV3-11*01 or IGHV3-11*03 or IGHV3-21*01 or IGHV3-21*02   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.8.7]  IGHG1   CH1 L IGKV6-21*01 or IGKV6D-21*01 or IGKV6D-41*01 IGKJ4*01 [6.3.9]  IGKC 
Mez 1dql H IGHV3-30*10   IGHJ3*01 or IGHJ3*02 [8.8.16]      L IGKV1-17*01 IGKJ1*01 [6.3.8]   
Pot 1igm H IGHV3-23*01   IGHJ5*01 [8.8.14]      L IGKV1-33*01 or IGKV1D-33*01 IGKJ3*01 [6.3.9]   
Q38D Mutant Of Len 1efq               A IGKV4-1*01 IGKJ2*01 [12.3.9]   
Rec 1ek3               A IGKV4-1*01 IGKJ4*01 [12.3.9]   
1ek3   B
Rei 1ar2               undefined IGKV1-33*01 or IGKV1D-33*01 IGKJ2*01 [6.3.9]   
1rei   A
1rei   B
Reiv-T39K 1bww               A IGKV1-33*01 or IGKV1D-33*01 IGKJ2*01 [6.3.9]   
1bww   B
Tr1.9 1vge H IGHV1-3*01   IGHJ4*01 or IGHJ4*02 or IGHJ4*03 [8.8.14]  IGHG1   CH1 L IGKV1-13*02/1D-13*02 IGKJ4*01 [6.3.9]  IGKC 
Undefined 1hou H IGHV3-23*01   IGHJ6*01 or IGHJ6*02 [8.8.8]      L IGKV2D-29*01 IGKJ1*01 [11.3.10]   
Undefined 1qac               A IGKV4-1*01 IGKJ2*01 [12.3.9]   
Undefined 1qac               B IGKV4-1*01 IGKJ2*01 [12.3.9]   
Wat 1wtl               A IGKV1-33*01 or IGKV1D-33*01 IGKJ4*01 [6.3.9]   
1wtl   B

We thank Olga Posukh for her work in the gene and allele identification.


Created: 11/06/2001
Last updated: Monday, 11-Jul-2011 12:56:57 CEST
Author: Manuel Ruiz

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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