Proteins with known 3D structures
Classification by gene names: Human Immunoglobulins
Reference of this table: Ruiz, M. and Lefranc, M.-P., Immunogenetics, 53, 857-883 (2002) PMID:11862387, LIGM:259

39 different human immunoglobulin proteins with known 3D structures have been retrieved.
75 different PDB codes contain these proteins.

Updates from 09/05/2001 are available in IMGT/3Dstructure-DB. IMGT/3Dstructure-DB entries (cards) are identified by the PDB code.
Click on a PDB code to get the corresponding IMGT/3Dstructure-DB card.
Click on a protein name to get the corresponding Collier de Perles.

Human IGHV
IGHV subgroup IGHV gene name Number of
PDB entries
PDB codes Number of
proteins
Protein names
IGHV1 IGHV1-18        
IGHV1-2        
IGHV1-24        
IGHV1-3 2 1iga, 1vge 2 Iga1, Tr1.9
IGHV1-45        
IGHV1-46        
IGHV1-58        
IGHV1-69 3 1g9m, 1g9n, 1gc1 1 17B
IGHV1-8        
IGHV1-c        
IGHV1-f        
IGHV2 IGHV2-26        
IGHV2-5        
IGHV2-70        
IGHV3 IGHV3-11 1 1fh5 (1) 1 Mak33 (1)
IGHV3-13        
IGHV3-15        
IGHV3-16        
IGHV3-19        
IGHV3-20        
IGHV3-21 1 1fh5 (1) 1 Mak33 (1)
IGHV3-23 2 1hou, 1igm 2 Pot, Undefined
IGHV3-30 3 1aqk (1), 1dee, 1dql 3 B7-15A2 (1), IgmRf2A2, Mez
IGHV3-30-3 1 1aqk (1) 1 B7-15A2 (1)
IGHV3-33 3 2fb4, 2ig2, 8fab 2 Hil, Kol
IGHV3-35        
IGHV3-38        
IGHV3-43        
IGHV3-47        
IGHV3-48        
IGHV3-49        
IGHV3-53        
IGHV3-64        
IGHV3-66        
IGHV3-7        
IGHV3-72        
IGHV3-73        
IGHV3-74        
IGHV3-9 3 1adq, 1dfb, 1obe 2 3D6, Rf-An
IGHV3-d        
IGHV3-h        
IGHV4 IGHV4-28        
IGHV4-30-2        
IGHV4-30-4        
IGHV4-31        
IGHV4-34 1 1qlr 1 Kau Cold Agglutinin
IGHV4-39 1 1mco 1 Mcg
IGHV4-4        
IGHV4-59 4 1bvk, 1bvl, 1dl7, 7fab 3 HULYS11, M3C65, Newm
IGHV4-61        
IGHV4-b        
IGHV5 IGHV5-51        
IGHV5-a        
IGHV6 IGHV6-1        
IGHV7 IGHV7-4-1 2 1cz8, 1dx3 2 9E, Fab-12
IGHV7-81        


Human IGKV
IGKV subgroup IGKV gene name Number of
PDB entries
PDB codes Number of
proteins
Protein names
IGKV1 IGKV1-12        
IGKV1-13 2 1iga, 1vge 2 Iga1, Tr1.9
IGKV1-16        
IGKV1-17 1 1dql 1 Mez
IGKV1-27 2 1bvk, 1bvl 1 HULYS11
IGKV1-33 9 1ar2 (1), 1b0w (1), 1bre (1), 1bww (1), 1cz8 (1), 1igm (1), 1qp1 (1), 1rei (1), 1wtl (1) 6 Bre (1), Fab-12 (1), Pot (1), Rei (1), Reiv-T39K (1), Wat (1)
IGKV1-37        
IGKV1-39 1 1dee (1) 1 IgmRf2A2 (1)
IGKV1-5 2 1dfb, 1obe 1 3D6
IGKV1-6        
IGKV1-8        
IGKV1-9        
IGKV1D-12        
IGKV1D-13        
IGKV1D-16        
IGKV1D-17        
IGKV1D-33 9 1ar2 (1), 1b0w (1), 1bre (1), 1bww (1), 1cz8 (1), 1igm (1), 1qp1 (1), 1rei (1), 1wtl (1) 6 Bre (1), Fab-12 (1), Pot (1), Rei (1), Reiv-T39K (1), Wat (1)
IGKV1D-37        
IGKV1D-39 1 1dee (1) 1 IgmRf2A2 (1)
IGKV1D-42        
IGKV1D-43        
IGKV1D-8        
IGKV2 IGKV2-24        
IGKV2-28        
IGKV2-29        
IGKV2-30        
IGKV2-40        
IGKV2D-24        
IGKV2D-28        
IGKV2D-29 1 1hou 1 Undefined
IGKV2D-30        
IGKV2D-40        
IGKV3 IGKV3-11 1 1dx3 1 9E
IGKV3-15 3 1g9m (1), 1g9n (1), 1gc1 (1) 1 17B (1)
IGKV3-20        
IGKV3-7        
IGKV3D-11        
IGKV3D-15 3 1g9m (1), 1g9n (1), 1gc1 (1) 1 17B (1)
IGKV3D-20 1 1qlr 1 Kau Cold Agglutinin
IGKV3D-7        
IGKV4 IGKV4-1 10 1eeq, 1eeu, 1efq, 1ek3, 1lve, 1qac, 2lve, 3lve, 4lve, 5lve 7 Len, Len (mutant), M4L/Y(27D)D/Q89D/T94H Mutant Of Len, M4L/Y(27D)D/T94H Mutant Of Len, Q38D Mutant Of Len, Rec, Undefined
IGKV5 IGKV5-2        
IGKV6 IGKV6-21 1 1fh5 (1) 1 Mak33 (1)
IGKV6D-21 1 1fh5 (1) 1 Mak33 (1)
IGKV6D-41 1 1fh5 (1) 1 Mak33 (1)

Human IGLV
IGLV subgroup IGLV gene name Number of
PDB entries
PDB codes Number of
proteins
Protein names
IGLV1 IGLV1-36 1 2rhe 1 Rhe
IGLV1-40 2 1aqk, 7fab 2 B7-15A2, Newm
IGLV1-41        
IGLV1-44 5 1bjm, 2fb4, 2ig2, 3bjl, 4bjl 2 Kol, Loc
IGLV1-47        
IGLV1-50        
IGLV1-51        
IGLV2 IGLV2-11        
IGLV2-14        
IGLV2-18        
IGLV2-23 1 1mcw 1 Mcg-Weir Hybrid
IGLV2-33        
IGLV2-8 20 1a8j, 1dcl, 1mcb, 1mcc, 1mcd, 1mce, 1mcf, 1mch, 1mci, 1mcj, 1mck, 1mcl, 1mcn, 1mco, 1mcq, 1mcr, 1mcs, 1mcw, 2mcg, 3mcg 2 Mcg, Mcg-Weir Hybrid
IGLV3 IGLV3-1 1 1lil 1 Cle
IGLV3-10        
IGLV3-12        
IGLV3-16        
IGLV3-19        
IGLV3-21 2 1adq, 2loi 2 Loi, Rf-An
IGLV3-22        
IGLV3-25 1 8fab 1 Hil
IGLV3-27        
IGLV3-32        
IGLV3-9        
IGLV4 IGLV4-3        
IGLV4-60        
IGLV4-69        
IGLV5 IGLV5-37        
IGLV5-39        
IGLV5-45        
IGLV5-48        
IGLV5-52        
IGLV6 IGLV6-57 2 1cd0, 2cd0 2 Jto, Wil
IGLV7 IGLV7-43 1 1dl7 (1) 1 M3C65 (1)
IGLV7-46 1 1dl7 (1) 1 M3C65 (1)
IGLV8 IGLV8-61        
IGLV9 IGLV9-49        
IGLV10 IGLV10-54        
IGLV11 IGLV11-55        

(1) Unique assignment to a given V-GENE is not possible.


Created: 26/06/2001
Last updated: Monday, 11-Jul-2011 12:56:57 CEST
Author: Manuel Ruiz

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

CNRS Université de Montpellier European Commission
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy

© Copyright 1995-2017 IMGT®, the international ImMunoGeneTics information system®