FR-IMGT and CDR-IMGT lengths: Rainbow trout (Oncorhynchus mykiss) IGIV


Only FUNCTIONAL and ORF V-GENEs are shown.

IGIV
genes
FR1-IMGT
1 to 26
CDR1-IMGT
27 to 38
FR2-IMGT
39 to 55
CDR2-IMGT
56 to 65
FR3-IMGT
66 to 104
CDR3-IMGT
(germline V-GENE)
105 to 116
(26) (6-9,11) (16,17) (3,9,10,15(2)) (36,37) (8,10-12)
IGIV1S1
IGIV1S2
IGIV1S3
IGIV1S4
IGIV1S5
  8
 
8
9
11
  3 -3 (aa 73, 81, 82) 12
11 (1)
11 (1)
8 (1)
8 (1)
IGIV2S1
IGIV2S2
IGIV2S3
IGIV2S4
IGIV2S5
IGIV2S6
IGIV2S7
IGIV2S8
IGIV2S9
IGIV2S11
IGIV2S12
IGIV2S13
  6
6
6
6
6
6
6

6
7
6
6
 
 
 
 
 
 
 
 
 
 
 
-1 (aa 45)
15 (2)
15 (2)
15 (2)
15 (2)
10
10
10
10
9
10
10
10
-2 (aa 73, 81)
-2 (aa 73, 81)
-2 (aa 73, 81)
-2 (aa 73, 81)
-2 (aa 73, 81)
-2 (aa 73, 81)
-2 (aa 73, 81)
-2 (aa 73, 81)
-3 (aa 73, 74, 81)
-2 (aa 73, 81)
-3 (aa 73, 74, 81)
-2 (aa 73, 81)
11
11
11
10 (1)
10 (1)
10 (1)
10 (1)
11
11
11
11
11

IMGT notes:
(1) Probable CDR3-IMGT length, but needs to be confirmed with germline sequences.
(2) Insertion of 5 amino acids between positions 60 and 61 in CDR2-IMGT (60A, 60B, 60C, 60D and 60E).


Created: 08/09/1999
Last updated: Friday, 27-May-2016 21:01:31 CEST
Authors: Sylvaine Artero and Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

CNRS Université de Montpellier European Commission
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy

© Copyright 1995-2017 IMGT®, the international ImMunoGeneTics information system®