IMGT Web resources: IMGT repertoire FR-IMGT and CDR-IMGT lengths: Rainbow trout (Oncorhynchus mykiss) TRBV

Only FUNCTIONAL and ORF V-GENEs are shown.

The proteolytic cleavage site between the leader peptide and the V-REGION is putative and the assignment of amino acid 1 to one or the other region is uncertain.

TRBV
genes
FR1-IMGT
1 to 26
CDR1-IMGT
27 to 38
FR2-IMGT
39 to 55
CDR2-IMGT
56 to 65
FR3-IMGT
66 to 104
CDR3-IMGT
(germline V-GENE)
105 to 115
(26) (6,7,9) (17) (3,4,6-8,10) (36,39) (2 to 4) (1)
TRBV1S1 to
TRBV1S5
  7   8 -2 (aa 73, 82) 3(1)
TRBV2S1 to
TRBV2S27
  6   4 -2 (aa 73, 82) 2,3,4 (1)
TRBV3S1,
TRBV3S2
  6   8 -1 (aa 82), +1 (aa 96A) 3 (1)
TRBV4S1   6   8 -3 (aa 81, 82, 83) 3 (1)
TRBV5S1  
6
 
10
-1 (aa 82) +1 (aa 96A)
3 (1)
TRBV6S1   9   3 -4 (aa 73, 81, 82, 83) +1 (aa 96A) 2 (1)
TRBV7S1 to
TRBV7S4
  6   7 -1 (aa 82) 3 (1)
TRBV8S1 to
TRBV8S3
  6   6 -2 (aa 73, 82) 3 (1)
TRBV9S1   6   4 -3 (aa 81, 82, 83) 3 (1)
TRBV10S1   6   7 -3 (aa 73, 82, 96) 3 (1)

IMGT note:
(1) Probable CDR3-IMGT length but needs to be confirmed with germline sequences.


Created: 21/11/2002
Author: Géraldine Folch

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