Alignment of alleles: Atlantic salmon (Salmo salar) IGIC1S15

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                               
                                                        1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                                                                               
  AF462237,IGIC1S15*01          
  
                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                             Q               Q   G   K   A   T   L   M   C   L   A   N   K   G 
  AF462237,IGIC1S15*01                      CAG ... ... ... CAG GGG AAG GCC ACT CTC ATG TGC CTG GCC AAC AAG GGC

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 F   P           S   D   W   K   L   S   W   K   V   D   G   S   S   S   S   N 
  AF462237,IGIC1S15*01          TTC CCC ... ... TCA GAC TGG AAG CTG AGT TGG AAG GTG GAC GGT AGC AGC AGC AGT AAC

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                 T   W   E   V   T   G   S   P   G   V   Q   E   K   D                         
  AF462237,IGIC1S15*01          ACC TGG GAG GTG ACC GGG AGC CCC GGG GTC CAG GAG AAG GAT ... ... ... ... ... ...

                                ________________                                                _EF_____        
                               85.4    85.2                                                    96.1            
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 G   H   Y   S   W   S   S   T   L   T   L   P   V   D   Q   W           K   K 
  AF462237,IGIC1S15*01          GGT CAC TAC AGC TGG AGC AGC ACC CTG ACC CTC CCT GTT GAC CAG TGG ... ... AAG AAG

                                                        _______________________FG___________________________    
                                                                                                               
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 V   G   S   V   V   C   E   A   T   Q   G               S   Q   S   P   L   S 
  AF462237,IGIC1S15*01          GTG GGC TCT GTG GTC TGT GAG GCC ACC CAG GGC ... ... ... TCC CAG TCT CCA CTC TCT

                                                                       
                                119 120 121 122 123 124 125 126 127 128
                                 E   T   L   R   R   D   Q   C   S   D   * 
  AF462237,IGIC1S15*01          GAG ACA CTG AGG AGA GAC CAG TGT TCT GAT 



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/06/2003
Author: Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

CNRS Université de Montpellier European Commission
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy

© Copyright 1995-2018 IMGT®, the international ImMunoGeneTics information system®