Alignment of alleles: Atlantic salmon (Salmo salar) IGIC1S6

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                                  
                                                           1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                            S   N   S   A   P   T   L   T   V   L   P   P   S   S 
  AF273017,IGIC1S6*01,(cDNA)                             (A)GT AAC AGT GCC CCC ACC CTC ACC GTC CTG CCC CCC TCT AGT

                                                   ___AB_______                                            ________
                                                  15.1    15.3                                                    
                                    12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                    E   E   L   S   S           T   T   T   A   T   L   M   C   L   A   N   K   G 
  AF273017,IGIC1S6*01,(cDNA)       GAG GAG CTG TCC AGT ... ... ACA ACA ACA GCC ACA CTG ATG TGT CTG GCC AAC AAG GGC

                                   _________BC_____________________                            ___________CD_______
                                                                                              45.1    45.3    45.5
                                    29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                    F   P           S   D   W   T   M   S   W   K   V   D   G   T   S   K         
  AF273017,IGIC1S6*01,(cDNA)       TTC CCC ... ... TCA GAC TGG ACC ATG AGC TGG AAA GTG GAC GGC ACC AGC AAG ... ...

                                   ________                                _________________________DE_____________
                                      45.7                                84.1    84.3    84.5    84.7    85.6    
                                  45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                            K   Q   E   A   S   P   G   V   L   E   K   D                         
  AF273017,IGIC1S6*01,(cDNA)       ... ... AAG CAG GAG GCC AGT CCC GGG GTC CTG GAG AAG GAC ... ... ... ... ... ...

                                   ________________                                                _EF_____        
                                  85.4    85.2                                                    96.1            
                                      85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                    G   L   Y   S   W   S   S   T   L   T   L   T   A   Q   E   W           T   K 
  AF273017,IGIC1S6*01,(cDNA)       GGT CTG TAT AGC TGG AGC AGC ACC CTG ACT CTC ACT GCC CAG GAG TGG ... ... ACC AAG

                                                           _______________________FG___________________________    
                                                                                                                  
                                    99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                    A   G   E   V   T   C   E   A   Q   Q   I               S   Q   T   P   V   T 
  AF273017,IGIC1S6*01,(cDNA)       GCA GGA GAG GTG ACC TGT GAA GCA CAA CAG ATA ... ... ... TCC CAG ACT CCG GTC ACC

                                                                          
                                   119 120 121 122 123 124 125 126 127 128
                                    K   T   L   R   R   A   D   C   S   G   *  
  AF273017,IGIC1S6*01,(cDNA)       AAG ACC CTG AGG AGG GCT GAC TGT TCT GGG 



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/06/2003
Author: Nathalie Bosc

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