Alignment of alleles: Atlantic salmon (Salmo salar) IGIC2S2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                                  
                                                   1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                    D   S   T   L   P   P   P   V   L   T   I   L   P   P   S   S 
  AF406964,IGIC2S2*01,(cDNA)                     (G)AC TCT ACC CTC CCT CCT CCT GTC TTG ACC ATC CTC CCT CCG TCC AGC

                                                   ___AB_______                                            ________
                                                  15.1    15.3                                                    
                                    12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                    D   E   L   K               S   N   K   V   T   L   V   C   L   A   S   Q   M 
  AF406964,IGIC2S2*01,(cDNA)       GAT GAG TTG AAG ... ... ... TCC AAC AAA GTC ACC CTG GTG TGT CTG GCC AGT CAG ATG

                                   _________BC_____________________                        
                                                                                      
                                    29  30  31  32  33  34  35  36  39  40  41  42  43
                                    A   M           G   Y   A   D   V   S   W   T   A  
  AF406964,IGIC2S2*01,(cDNA)       GCC ATG ... ... GGC TAC GCC GAT GTC AGC TGG ACC GCT GC



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/06/2003
Author: Nathalie Bosc

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