IMGT Web resources: IMGT repertoire

Alignment of alleles: Atlantic salmon (Salmo salar) IGIC2S2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                                  
                                                   1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                    D   S   T   L   P   P   P   V   L   T   I   L   P   P   S   S 
  AF406964,IGIC2S2*01,(cDNA)                     (G)AC TCT ACC CTC CCT CCT CCT GTC TTG ACC ATC CTC CCT CCG TCC AGC

                                                   ___AB_______                                            ________
                                                  15.1    15.3                                                    
                                    12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                    D   E   L   K               S   N   K   V   T   L   V   C   L   A   S   Q   M 
  AF406964,IGIC2S2*01,(cDNA)       GAT GAG TTG AAG ... ... ... TCC AAC AAA GTC ACC CTG GTG TGT CTG GCC AGT CAG ATG

                                   _________BC_____________________                        
                                                                                      
                                    29  30  31  32  33  34  35  36  39  40  41  42  43
                                    A   M           G   Y   A   D   V   S   W   T   A  
  AF406964,IGIC2S2*01,(cDNA)       GCC ATG ... ... GGC TAC GCC GAT GTC AGC TGG ACC GCT GC

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/06/2003
Author: Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

IMGT® Founder and Executive Director Emeritus:: Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:: Sofia Kossida Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:: Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager:: Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster:: Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy