Alignment of alleles: Atlantic salmon (Salmo salar) IGIJ (overview)

Only one sequence for each allele is shown. Other known sequences are shown in the individual Alignments of alleles.

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The F, G and G of the FGXG motif are shown in brown, in the allele *01 amino acid sequence.


                                 Y   T   F   G   S   G   T   R   L   D   V   G  
  AF273012,IGIJ1S1*01           TAC ACT TTT GGT AGC GGC ACC AGA CTT GAT GTT GGA  #c
  
                                 F   T   F   G   S   G   T   R   L   D   V   G  
  AF273013,IGIJ1S2*01           TTC ACT TTT GGT AGT GGC ACC AGA CTT GAT GTT GGA  #c

                                 F   T   F   G   S   G   T   R   L   D   V   G  
  AF273014,IGIJ1S3*01           TTC ACT TTT GGT AGC GGC ACC AGA CTA GAT GTT GGA  #c

                                 Y   T   F   G   S   A   T   R   L   D   V   G  
  AF273015,IGIJ1S4*01           TAC ACT TTT GGT AGC GCC ACC AGA CTA GAT GTT GGA  #c
  
                                 W   N   F   G   S   G   T   R   L   D   V   G 
  AF273016,IGIJ1S5*01        G  TGG AAT TTT GGT AGT GGC ACC AGA CTT GAT GTT GGA  c(st)

                                 Y   T   F   G   S   G   T   R   L   D   V   G  
  AF273017,IGIJ1S6*01           TAC ACT TTT GGT AGC GGC ACC AGA CTA GAT GTT GGA  #c
  
                                 W   T   F   G   S   G   T   R   L   D   I   G  
  AF273019,IGIJ1S7*01           TGG ACT TTT GGT AGC GGC ACC AGA CTA GAT ATT GGA  #c
  
                                 F   T   F   G   S   A   T   R   L   D   V   G  
  AF273020,IGIJ1S8*01           TTC ACT TTT GGT AGC GCC ACC AGA CTA GAT GTT GGA  #c
  
                                 F   T   F   G   S   G   T   R   L   D   V   G  
  AF273021,IGIJ1S9*01           TTC ACT TTT GGT AGT GGC ACC AGA CTT GAT GTT GGA  #c

                                 Y   T   F   G   S   A   T   R   L   D   V   G  
  AF273018,IGIJ1S10*01          TAC ACT TTT GGT AGC GCC ACC AGA CTA GAT GTT GGA  #c

                                     T   F   G   G   G   T   R   L   D   I   G 
  AF406956,IGIJ1S11*01              ACT TTT GGT GGA GGC ACT AGA CTG GAT ATT GGA  #c
  
                                     T   F   G   G   G   T   R   L   D   I   G 
  AF406957,IGIJ1S12*01              ACT TTT GGT GGA GGC ACT AGA CTG GAT ATT GGA  #c
                                                                         
                                     T   F   G   G   G   T   R   L   D   I   G 
  AF406958,IGIJ1S13*01              ACT TTT GGT GGA GGC ACT AGA CTG GAT ATT GGA  #c

                                     V   F   G   Q   G   T   K   L   I   V   S 
  AF297518,IGIJ2S1*01               GTA TTC GGA CAA GGA ACC AAG CTC ATT GTC AGT  c(st)
  
                                     V   F   G   H   G   T   K   L   I   V   S                                                                
  AF406964,IGIJ2S2*01               GTA TTC GGA CAT GGA ACC AAG CTC ATT GTC AGT  #c

#c: rearranged cDNA
c: cDNA sequence
(st): sterile transcript


Created: 06/06/2003
Author: Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

CNRS Université de Montpellier European Commission
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy

© Copyright 1995-2018 IMGT®, the international ImMunoGeneTics information system®