Alignment of alleles: Atlantic salmon (Salmo salar) IGIV1S8

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20 
                                 Q   V   T   V   T   Q   T   P   A   V   K   A   V   L   T   G   Q   T   V   P 
  AF273018,IGIV1S8*01           CAG GTC ACT GTG ACT CAG ACT CCT GCA GTG AAA GCT GTT CTC ACA GGA CAG ACA GTC CCT

                                                        ___________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                 L   N   C   K   T   S   S   D   V   Y   Q   A   G   T   S   S   P   R   L   A 
  AF273018,IGIV1S8*01           CTG AAC TGT AAA ACC AGC AGT GAT GTG TAT CAA GCA GGG ACC TCT TCG CCC CGT CTA GCC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   Q   Q   K   P   G   E   A   P   K   L   L   I   Y   Y   A   T         
  AF273018,IGIV1S8*01           TGG TAC CAA CAG AAA CCT GGA GAA GCT CCT AAA CTC CTT ATT TAC TAT GCT ACA ... ...

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                                     T   L   Q   S   G   T   P       S   R   F   S   G   S   G 
  AF273018,IGIV1S8*01           ... ... ... ... ... ACA CTT CAG TCT GGG ACC CCA ... TCT AGA TTC AGT GGT AGT GGA

  
                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                         T   H   S   D   F   T   L   T   I   S   G   V   Q   A   E   D   A   G 
  AF273018,IGIV1S8*01           ... ... ACT CAT AGT GAC TTC ACT CTG ACC ATC AGT GGA GTC CAG GCT GAA GAT GCA GGC
                                                                                                               

                                                __________________CDR3-IMGT________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114 115
                                 D   Y   Y   C   Q   S   F   H   Y   P   N   S   K   Y   V   
  AF273018,IGIV1S8*01           GAT TAC TAC TGT CAG AGT TTC CAC TAT CCC AAT AGT AAA TAT GTG  #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/06/2003
Author: Nathalie Bosc

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For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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