Alignment of alleles: Atlantic salmon (Salmo salar) IGIV2S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20 
                                                                                                               
  AF406964,IGIV2S1*01           

                                                        ___________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                                                                                               
  AF406964,IGIV2S1*01          

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                                             G   A   P   Q   Y   V   L   R   Y   Y   Y   T   D 
  AF406964,IGIV2S1*01                                       GGA GCT CCT CAG TAT GTG TTA AGG TAT TAC TAT ACA GAC

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                 D   S   P   D   E   Y   G   S   G   F   S   S       D   R   F   T   S   K   A 
  AF406964,IGIV2S1*01           GAC TCT CCT GAT GAA TAT GGA TCT GGC TTC TCC TCT ... GAT CGT TTC ACA TCT AAA GCC

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                     T   S   D   K   D   Y   Q   F   I   I   S   N   V   E   E   T   D   S   A 
  AF406964,IGIV2S1*01           ... ACG TCT GAT AAG GAT TAT CAG TTT ATA ATC AGT AAT GTG GAG GAG ACA GAC TCA GCA

                                                ______________CDR3-IMGT________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114
                                 V   Y   Y   C   Q   T   R   N   D   S   P   Y   A   L
  AF406964,IGIV2S1*01           GTG TAT TAC TGT CAG ACT CGG AAT GAC TCT CCT TAT GCG CTC  #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/06/2003
Author: Nathalie Bosc

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For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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