Alignment of alleles: Spotted wolffish (Anarhichas minor) IGHV1S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 C   E   Q   L   T   Q   P   A   S       E   T   V   Q   P   G   Q   R   L   T 
  AY188783,IGHV1S3*01           TGT GAA CAG TTG ACA CAG CCA GCC TCT ... GAG ACT GTG CAG CCA GGT CAA CGT CTG ACC
                                                                                                               
  AY188785,IGHV1S3*01           --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---

                                                        _________________CDR1-IMGT______________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   T   C   Q   V   S   Y   A   L   S   S   Y   Y                       T   A 
  AY188783,IGHV1S3*01           ATC ACC TGT CAG GTC TCT TAT GCT CTT AGC AGC TAC TAC ... ... ... ... ... ACA GCT
                                                                                                               
  AY188785,IGHV1S3*01           --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- ---

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   P   A   G   K   G   L   E   W   I   G   M   K   Y   T   G   A 
  AY188783,IGHV1S3*01           TGG ATC AGA CAG CCT GCA GGG AAA GGA CTG GAG TGG ATT GGA ATG AAA TAT ACT GGA GCT
                                                                                                               
  AY188785,IGHV1S3*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                GT__________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 S                   Y   Y   K   D   S   L   K       N   K   F   S   I   D   L 
  AY188783,IGHV1S3*01           TCA ... ... ... ... TAC TAC AAA GAT TCA CTG AAG ... AAC AAG TTC AGT ATC GAT TTA
                                                                                                               
  AY188785,IGHV1S3*01           --- ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   T   S   S   K   T   V   T   L   T   G   Q   N   V   Q   P   E   D   T   A 
  AY188783,IGHV1S3*01           GAC ACT TCC AGC AAA ACA GTG ACT CTA ACT GGA CAG AAC GTG CAG CCT GAA GAC ACT GCT
                                                                                                               
  AY188785,IGHV1S3*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                -CDR3-IMGT___
                                101 102 103 104 105 106 107
                                 V   Y   Y   C   A   R   Y  
  AY188783,IGHV1S3*01           GTG TAT TAC TGT GCC AGA TAT  #c
                                                            
  AY188785,IGHV1S3*01           --- --- --- --- --- --- ---  #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 21/05/2003
Author: Nathalie Bosc

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For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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