Protein display: Clearnose skate (Raja eglanteria) IGH C-REGIONs

The IGHC protein display numbering is according to the IMGT unique numbering for C-DOMAIN and C-LIKE-DOMAIN.

Only the *01 allele of each functional, ORF and in-frame pseudogenes C-REGION is shown.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

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      IGHC
      genes
_____________________________________________________________________________________________________________________________________________________________________________________________

                                A                 B         BC         C               D                     E              F               G

                         --------------->    ---------->             ----->        ----------->       -------------->  ------------->   ---------->

                          1       10   15  16  20 23      30    36 39 41 45      77     84             85  89     96 97    104   110 114   120       130       140       150

                   7654321|........|....|123|...|...... ...|.....|  |.....|1234567|......|12345677654321|..........|12|............|...|.....|.........|.........|.........|

    CH1
    U08009  ,IGHR1  (E)GETLPSVHITSSCNTES....GQEISILCLVK DYQP..EIIN  LIWSTSSGDITS..GITKYPPVLGQN......NKYTMSSLLRVPVADW..NRNNVYYCRAGYK...SANMVKTVFDKPK
    U08010  ,IGHR2c (E)GETLPSVHITSSCNTES....GQEISILCLVK DYQP..EIIN  QIWSTSSGDITS..GITKYPPVLGQN......NKYTMSSLLRVPVADW..NRNNVYYCRAGYK...SANMVKTVFDKPK
    U08012  ,IGHR4c (E)GEILPSVHITSSCNTES....GQEISILCLVK DYQP..EIIN  QIWSTSSGDIKS..GITKYPPVLGQN......NTYTMSSLLRVPVADW..NRNNVYYCRAGYK...SANMVKTVFDKPK
    CH2
    U08009  ,IGHR1   (P)SRAPQLIPLVPSPEVLHN..QTTAVLGCMIS GFSP..DNIK  VTWKKAGLNQA...GVVLPSTPGTNG.......GFETVAYLLLRVEEW..TNKQEYTCEVTHTP..SGFSDRINMRYQEGPGCSMCMPKFIYQSNVNVTFTDGSTQQYHCWAGKCEIK
    U08010  ,IGHR2c  (P)SRAPQLIPLVPSPEVLHN..QTTAVLGCMIS GFSP..DNIK  VTWKKAGLNQA...GVVLPSTPGTNG.......GFETVAYLLLRVEEW..TNKQEYTCEVTHTP..SGFSDRINMRYQEGPGCS

c: cDNA sequence


Created: Friday, 27-May-2016 21:03:27 CEST
Author: Dominique Scaviner