Table of alleles: Atlantic cod (Gadus morhua) IGIV

The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Nucleotide mutations and amino acid changes in CDR3-IMGT of rearranged sequences are not taken into account for the description of polymorphism.

Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IGIV
subgroup
IGIV
gene name
Fct IGIV
allele name
Accession numbers Confirmed
by
genetics
and/or
data
Description of mutations
IGIV1 IGIV1S1 F IGIV1S1*01 AF104898    
IGIV1S2 (F) IGIV1S2*01 AJ225249 +  
IGIV1S3 (F) IGIV1S3*01 AJ225237    
IGIV1S4 (F) IGIV1S4*01 AJ225238   a60  |a108  |a163  ,a165  ,K55  |
(F) IGIV1S4*02 AJ225245   a60>t|a108>t|
(F) IGIV1S4*03 AJ225242   a60>t|a108>t|a163>g,a165>t,K55>D|
IGIV1S5 (F) IGIV1S5*01 AJ225255    
IGIV1S6 (F) IGIV1S6*01 AJ225251    
IGIV1S7 (F) IGIV1S7*01 AJ225257    
IGIV1S8 (F) IGIV1S8*01 AJ225259    
IGIV1S9 (F) IGIV1S9*01 AJ225266    
IGIV1S10 (F) IGIV1S10*01 AJ225239    
IGIV1S11 (F) IGIV1S11*01 AJ225248    
IGIV1S12 (F) IGIV1S12*01 AJ225244    
IGIV1S13 (F) IGIV1S13*01 AJ225246    
IGIV1S14 (F) IGIV1S14*01 AJ225250    
IGIV1S15 (F) IGIV1S15*01 AJ225252    
IGIV1S16 (F) IGIV1S16*01 AJ225268    
IGIV1S17 (F) IGIV1S17*01 AJ225243   g279  |c280  ,P94  |
(F) IGIV1S17*02 AJ225256   g279>c|c280>g,P94>A|
IGIV1S18 (F) IGIV1S18*01 AJ225263   c306  |
(F) IGIV1S18*02 AJ225264   c306>t|
IGIV1S19 F IGIV1S19*01 AF104898    
IGIV1S20 F IGIV1S20*01 AF104899    
IGIV1S21 (F) IGIV1S21*01 AJ225253    
IGIV1S22 (F) IGIV1S22*01 AJ225247    
IGIV1S23 (F) IGIV1S23*01 AJ225254    
IGIV1S24 (F) IGIV1S24*01 AJ225258 +  
IGIV1S25 (F) IGIV1S25*01 AJ225260    
IGIV1S26 (F) IGIV1S26*01 X76517    
IGIV1S27 (F) IGIV1S27*01 X68516    
IGIV1S28 (F) IGIV1S28*01 AJ225240 + t158  ,I53  |
(F) IGIV1S28*02 AJ225262   t158>c,I53>T|
IGIV1S29 F IGIV1S29*01 AJ293808   g147  |
(F) IGIV1S29*02 AJ293807   g147>a|


Created: 21/03/2002
Last updated: Friday, 27-May-2016 21:03:36 CEST
Author: Nathalie Bosc

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