Table of alleles: Mouse ( Mus musculus) TRAJ

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT numbering and description of alleles for germline J-REGIONs start with the first nucleotide of the first codon. The accession number of a reference sequence is given for each allele.

Click on a gene name to get the alignment of the corresponding J-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

gene name
allele name
Strain Accession
Confirmed by
and/or data
Description of mutations
TRAJ2 F TRAJ2*01 B10.D2-H2dm1 M64239   g9-a11         ,G3    |
TRAJ2*02B10.A M38103   g9-a11>del(3nt),G3>del|
TRAJ3 ORF TRAJ3*01B10.D2-H2dm1 M64239    
TRAJ4 ORF TRAJ4*01 B10.D2-H2dm1 M64239    
TRAJ5 F TRAJ5*01 B10.A M38105 +  
TRAJ6 F TRAJ6*01 B10.D2-H2dm1 M64239    
TRAJ7 ORF TRAJ7*01 B10.D2-H2dm1 M64239    
TRAJ9 F TRAJ9*01 BALB/c X03761 + c43  |
(F) TRAJ9*02 C57Bl/Ka X02933 + c43>t|
TRAJ11 F TRAJ11*01 B10.D2-H2dm1 M64239    
TRAJ12 F TRAJ12*01 B10.D2-H2dm1 M64239 +  
TRAJ13 F TRAJ13*01 B10.D2-H2dm1 M64239 +  
TRAJ15 F TRAJ15*01 B10.D2-H2dm1 M64239 +  
TRAJ16 F TRAJ16*01 B10.D2-H2dm1 X03057 +  
TRAJ17 F TRAJ17*01 B10.D2-H2dm1 M64239    
TRAJ18 F TRAJ18*01 B10.D2-H2dm1 M64239 +  
TRAJ19 ORF TRAJ19*01 B10.D2-H2dm1 M64239    
TRAJ20 ORF TRAJ20*01 B10.D2-H2dm1 M64239    
TRAJ21 F TRAJ21*01 B10.D2-H2dm1 M64239 + a34  ,T12  |
(F) TRAJ21*02
X52448 + a34>t,T12>S|
TRAJ22 F TRAJ22*01 B10.D2-H2dm1 M64239 +  
TRAJ23 F TRAJ23*01 B10.D2-H2dm1 M64239 +  
TRAJ24 F TRAJ24*01 B10.D2-H2dm1 M64239 +  
TRAJ25 ORF TRAJ25*01 B10.D2-H2dm1 M64239    
TRAJ26 F(1) TRAJ26*01 B10.D2-H2dm1 M64239    
TRAJ27 F TRAJ27*01 B10.D2-H2dm1 M64239 +  
TRAJ28 F TRAJ28*01
X17177 +  
TRAJ29 ORF TRAJ29*01 B10.D2-H2dm1 M64239    
TRAJ30 F TRAJ30*01 B10.D2-H2dm1 M64239 +  
TRAJ31 F TRAJ31*01 B10.D2-H2dm1 M64239 +  
TRAJ32 F TRAJ32*01
X02858 +  
TRAJ33 F TRAJ33*01 B10.D2-H2dm1 M64239 +  
TRAJ34 F TRAJ34*01
X02862 + g13  ,D5  |c27  |c51  |c53  ,S18  |
(F) TRAJ34*02
M20875 + g13>a,D5>N|c27>t|c51>a|c53>t,S18>L|
TRAJ35 F TRAJ35*01
X03056 + c52-a54         ,P18    |t55  ,g56  ,C19  |
F TRAJ35*02
X02843 + c52-a54>del(3nt),P18>del|t55>g,g56>t,C19>V|
TRAJ37 F TRAJ37*01 B10.D2-H2dm1 M64239 +  
TRAJ38 F TRAJ38*01 B10.D2-H2dm1 M64239 +  
TRAJ39 F TRAJ39*01 B10.D2-H2dm1 M64239 +  
TRAJ40 F TRAJ40*01
X03058 +  
TRAJ41 ORF TRAJ41*01 B10.D2-H2dm1 M64239    
TRAJ42 F TRAJ42*01 B10.D2-H2dm1 M64239 + a28  ,T10  |a39  |a60  |
(F) TRAJ42*02
M16675 + a28>g,T10>A|a39>g|a60>g|
TRAJ43 F TRAJ43*01 B10.D2-H2dm1 M64239   c19  ,g20  ,R7  |t43  ,S15  |
(F) TRAJ43*02 DBA/2 X55823 + c19>g,g20>c,R7>A|t43>a,S15>T|
TRAJ44 ORF TRAJ44*01 B10.D2-H2dm1 M64239 +  
TRAJ45 F TRAJ45*01
X02859 +  
TRAJ46 ORF TRAJ46*01 B10.D2-H2dm1 M64239    
TRAJ47 ORF TRAJ47*01 B10.D2-H2dm1 M64239    
TRAJ48 F TRAJ48*01 B10.D2-H2dm1 M64239 +  
TRAJ49 F TRAJ49*01
X03059 +  
TRAJ50 F TRAJ50*01 B10.D2-H2dm1 M64239 +  
TRAJ52 F TRAJ52*01 B10.D2-H2dm1 M64239 +  
TRAJ53 F TRAJ53*01 B10.D2-H2dm1 M64239    
TRAJ56 F TRAJ56*01 B10.D2-H2dm1 M64239 +  
TRAJ57 F TRAJ57*01 B10.D2-H2dm1 M64239 +  
TRAJ58 F TRAJ58*01 B10.D2-H2dm1 M64239 +  
TRAJ59 ORF TRAJ59*01 B10.D2-H2dm1 M64239    

(1) The deletion of c26 in the TRAJ26 J-REGION, in M64239 and AE008686, is probably due to a sequencing error. The functionality of TRAJ26 was changed (on 19/01/2007) from pseudogene (due to a frameshift) to functional.

Created: 11/07/2001
Last updated: 09/11/2018
Author: Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc

CNRS Université de Montpellier European Commission
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
IMGT® Director:
Sofia Kossida
Bioinformatics manager:
Véronique Giudicelli
Computer manager:
Patrice Duroux
Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy

© Copyright 1995-2019 IMGT®, the international ImMunoGeneTics information system®