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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
IGHV1 IGHV1-1 IGHV1-1*01 F 31 Red Jungle fowl IMGT000014 MAP 94809..95391 Red Jungle fowl IMGT000007 77987..78568
IGHV1-2 IGHV1-2*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(87193..87495) (29) Red Jungle fowl IMGT000007 complement(70370..70672) (29)
IGHV1-3 IGHV1-3*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(86066..86368) (29) Red Jungle fowl IMGT000007 complement(69243..69545) (29)
IGHV1-4 IGHV1-4*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(84939..85241) (29) Red Jungle fowl IMGT000007 complement(68116..68418) (29)
IGHV1-5 IGHV1-5*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(83812..84114) (29) Red Jungle fowl IMGT000007 complement(66989..67291) (29)
IGHV1-6 IGHV1-6*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(82685..82987) (29) Red Jungle fowl IMGT000007 complement(65862..66164) (29)
IGHV1-7 IGHV1-7*01 P (2) 31 Red Jungle fowl IMGT000014 MAP 82185..82487 (29) Red Jungle fowl IMGT000007 65362..65664 (29)
IGHV1-8 IGHV1-8*01 P (3) 31 Red Jungle fowl IMGT000014 MAP complement(81618..81911) (29) Red Jungle fowl IMGT000007 complement(64795..65088) (29)
IGHV1-9 IGHV1-9*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 80839..81138 (29) Red Jungle fowl IMGT000007 64016..64315 (29)
IGHV1-10 IGHV1-10*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(80109..80411) (29) Red Jungle fowl IMGT000007 complement(63286..63588) (29)
IGHV1-11 IGHV1-11*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 79117..79419 (29) Red Jungle fowl IMGT000007 62294..62596 (29)
IGHV1-12 IGHV1-12*01 P (4) 31 Red Jungle fowl IMGT000014 MAP complement(78159..78458) (29) Red Jungle fowl IMGT000007 complement(61336..61635) (29)
IGHV1-13 IGHV1-13*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 77051..77350 (29) Red Jungle fowl IMGT000007 60228..60527 (29)
IGHV1-14 IGHV1-14*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(76114..76404) (29) Red Jungle fowl IMGT000007 complement(59291..59581) (29)
IGHV1-15 IGHV1-15*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 75590..75889 (29) Red Jungle fowl IMGT000007 58767..59066 (29)
IGHV1-16 IGHV1-16*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(74397..74699) (29) Red Jungle fowl IMGT000007 complement(57574..57876) (29)
IGHV1-17 IGHV1-17*01 P (4) 31 Red Jungle fowl IMGT000014 MAP 73900..74202 (29) Red Jungle fowl IMGT000007 57077..57379 (29)
IGHV1-18 IGHV1-18*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(73272..73574) (29) Red Jungle fowl IMGT000007 complement(56449..56751) (29)
IGHV1-19 IGHV1-19*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 72499..72801 (29) Red Jungle fowl IMGT000007 55676..55978 (29)
IGHV1-20 IGHV1-20*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(71551..71853) (29) Red Jungle fowl IMGT000007 complement(54728..55030) (29)
IGHV1-21 IGHV1-21*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 70774..71073 (29) Red Jungle fowl IMGT000007 53951..54250 (29)
IGHV1-21*02 P (6) M30325 [1] (30) <1..257 (29)
IGHV1-22 IGHV1-22*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(70146..70448) (29) Red Jungle fowl IMGT000007 complement(53323..53625) (29)
IGHV1-23 IGHV1-23*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 69389..69691 (29) Red Jungle fowl IMGT000007 52566..52868 (29)
IGHV1-24 IGHV1-24*01 P (7) 31 Red Jungle fowl IMGT000014 MAP complement(68673..68976) (29) Red Jungle fowl IMGT000007 complement(51850..52153) (29)
IGHV1-25 IGHV1-25*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 67893..68195 (29) Red Jungle fowl IMGT000007 51070..51372 (29)
IGHV1-26 IGHV1-26*01 P (8) Red Jungle fowl IMGT000007 MAP complement(50446..50744) (29)
IGHV1-26*02 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(67268..67567) (29)
IGHV1-28 IGHV1-28*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(66100..66399) (29) Red Jungle fowl IMGT000007 complement(49278..49577) (29)
IGHV1-28D IGHV1-28D*02 P (9) 31 Red Jungle fowl IMGT000014 MAP complement(37736..38034) (29)
IGHV1-28N IGHV1-28N*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(31654..31953) (29)
IGHV1-29 IGHV1-29*01 P (10) 31 Red Jungle fowl IMGT000014 MAP <65830..65877 (29) Red Jungle fowl IMGT000007 <49008..49055 (29)
M30332 [1] <25..72 (29)
IGHV1-29D IGHV1-29D*01 P (10) 31 Red Jungle fowl IMGT000014 MAP <37466..37513 (29)
IGHV1-29N IGHV1-29N*01 P (10) 31 Red Jungle fowl IMGT000014 MAP <31384..31431 (29)
IGHV1-30 IGHV1-30*01 P (5) Red Jungle fowl IMGT000007 MAP 48316..48615 (29)
IGHV1-30*02 P (5) 31 Red Jungle fowl IMGT000014 MAP 65138..65437 (29)
IGHV1-30D IGHV1-30D*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 36774..37073 (29)
IGHV1-30N IGHV1-30N*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 30692..30991 (29)
IGHV1-31 IGHV1-31*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(64194..64496) (29) Red Jungle fowl IMGT000007 complement(47372..47674) (29)
IGHV1-32 IGHV1-32*01 P (11) Red Jungle fowl IMGT000007 MAP 46601..46898 (29)
IGHV1-32*02 P (5) 31 Red Jungle fowl IMGT000014 MAP 63422..63721 (29)
IGHV1-34 IGHV1-34*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 62227..62526 (29) Red Jungle fowl IMGT000007 45406..45705 (29)
IGHV1-35 IGHV1-35*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(61344..61643) (29) Red Jungle fowl IMGT000007 complement(44523..44822) (29)
IGHV1-35*02 P (6) M30323 [1] (30) 90..389 (29)
IGHV1-36 IGHV1-36*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 60844..61146 (29) Red Jungle fowl IMGT000007 44023..44325 (29)
IGHV1-36*02 P (12) M30322 [1] (30) 100..402 (29)
IGHV1-37 IGHV1-37*01 P (13) 31 Red Jungle fowl IMGT000014 MAP complement(60011..60313) (29) Red Jungle fowl IMGT000007 complement(43190..43492) (29)
M30324 [1] (14) <1..249 (29)
IGHV1-38 IGHV1-38*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 59199..59501 (29) Red Jungle fowl IMGT000007 42378..42680 (29)
IGHV1-39 IGHV1-39*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(58313..58615) (29) Red Jungle fowl IMGT000007 complement(41492..41794) (29)
IGHV1-40 IGHV1-40*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 57816..58118 (29) Red Jungle fowl IMGT000007 40995..41297 (29)
IGHV1-41 IGHV1-41*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(56613..56915) (29) Red Jungle fowl IMGT000007 complement(39792..40094) (29)
IGHV1-42 IGHV1-42*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 55665..55970 (29) Red Jungle fowl IMGT000007 38844..39149 (29)
IGHV1-43 IGHV1-43*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(54540..54839) (29) Red Jungle fowl IMGT000007 complement(37719..38018) (29)
IGHV1-44 IGHV1-44*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 53754..54056 (29) Red Jungle fowl IMGT000007 36934..37236 (29)
IGHV1-45 IGHV1-45*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(52754..53053) (29) Red Jungle fowl IMGT000007 complement(35934..36233) (29)
IGHV1-46 IGHV1-46*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 51968..52270 (29) Red Jungle fowl IMGT000007 35148..35450 (29)
IGHV1-47 IGHV1-47*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(50968..51267) (29) Red Jungle fowl IMGT000007 complement(34148..34447) (29)
IGHV1-48 IGHV1-48*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 50185..50487 (29) Red Jungle fowl IMGT000007 33362..33664 (29)
IGHV1-49 IGHV1-49*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(49185..49484) (29) Red Jungle fowl IMGT000007 complement(32362..32661) (29)
IGHV1-50 IGHV1-50*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 48399..48701 (29) Red Jungle fowl IMGT000007 31576..31878 (29)
IGHV1-51 IGHV1-51*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(47429..47728) (29) Red Jungle fowl IMGT000007 complement(30606..30905) (29)
IGHV1-51*02 P (12) M30329 [1] (30) 24..323 (29)
IGHV1-53 IGHV1-53*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(46261..46560) (29) Red Jungle fowl IMGT000007 complement(29438..29737) (29)
IGHV1-53-1 IGHV1-53-1*01 P (10) 31 Red Jungle fowl IMGT000014 MAP <45992..46039 (29) Red Jungle fowl IMGT000007 <29169..29216 (29)
IGHV1-54 IGHV1-54*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 45312..45611 (29) Red Jungle fowl IMGT000007 28489..28788 (29)
IGHV1-55 IGHV1-55*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(44989..45291) (29) Red Jungle fowl IMGT000007 complement(28166..28468) (29)
IGHV1-56 IGHV1-56*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 44240..44542 (29) Red Jungle fowl IMGT000007 27417..27719 (29)
IGHV1-57 IGHV1-57*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(43611..43913) (29) Red Jungle fowl IMGT000007 complement(26788..27090) (29)
IGHV1-58 IGHV1-58*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 42844..43146 (29) Red Jungle fowl IMGT000007 26021..26323 (29)
IGHV1-59 IGHV1-59*01 P (15) 31 Red Jungle fowl IMGT000014 MAP complement(42222..42518) (29) Red Jungle fowl IMGT000007 complement(25399..25695) (29)
IGHV1-59-1 IGHV1-59-1*01 P (10) 31 Red Jungle fowl IMGT000014 MAP <41952..41999 (29) Red Jungle fowl IMGT000007 <25129..25176 (29)
IGHV1-60 IGHV1-60*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 41272..41571 (29) Red Jungle fowl IMGT000007 24449..24748 (29)
IGHV1-60*02 P (6) M30335 [1] (30) 100..399 (29)
IGHV1-61 IGHV1-61*01 P (16) Red Jungle fowl IMGT000007 MAP complement(<23595..23807) (29)
IGHV1-61*02 P (4) 31 Red Jungle fowl IMGT000014 MAP complement(40325..40630) (29)
IGHV1-61*03 P (17) M30337 [1] (30) 7..312 (29)
IGHV1-61-1 IGHV1-61-1*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 39548..39850 (29)
IGHV1-61-2 IGHV1-61-2*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(38923..39222) (29)
IGHV1-62 IGHV1-62*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(29748..30050) (29) Red Jungle fowl IMGT000007 complement(22994..23296) (29)
IGHV1-62D IGHV1-62D*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(35831..36133) (29)
IGHV1-62D-1 IGHV1-62D-1*01 P (18) 31 Red Jungle fowl IMGT000014 MAP 35054..35357 (29)
IGHV1-62D-1*02 P (19) M30333 [1] (30) <1..286 (29)
IGHV1-62D-2 IGHV1-62D-2*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(34328..34627) (29)
IGHV1-62D-3 IGHV1-62D-3*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 33578..33877 (29)
IGHV1-62D-4 IGHV1-62D-4*01 P (7) 31 Red Jungle fowl IMGT000014 MAP complement(32848..33151) (29)
IGHV1-63 IGHV1-63*01 P (20) Red Jungle fowl IMGT000007 MAP 22226..22521 (29)
IGHV1-63*02 P (5) 31 Red Jungle fowl IMGT000014 MAP 28975..29274 (29)
IGHV1-65 IGHV1-65*01 P (2) Red Jungle fowl IMGT000007 MAP 21041..21333 (29)
IGHV1-65*02 P (21) 31 Red Jungle fowl IMGT000014 MAP 27782..28080 (29)
IGHV1-66 IGHV1-66*01 P (22) Red Jungle fowl IMGT000007 MAP complement(20159..20456) (29)
IGHV1-66*02 P (22) 31 Red Jungle fowl IMGT000014 MAP complement(26902..27199) (29)
IGHV1-67 IGHV1-67*01 P (23) Red Jungle fowl IMGT000007 MAP 19673..19962 (29)
IGHV1-67*02 P (2) 31 Red Jungle fowl IMGT000014 MAP 26402..26695 (29)
IGHV1-68 IGHV1-68*01 P (13) 31 Red Jungle fowl IMGT000014 MAP complement(25571..25873) (29) Red Jungle fowl IMGT000007 complement(18841..19143) (29)
IGHV1-69 IGHV1-69*01 P (23) Red Jungle fowl IMGT000007 MAP 18030..18331 (29)
IGHV1-69*02 P (21) 31 Red Jungle fowl IMGT000014 MAP 24761..25062 (29)
IGHV1-70 IGHV1-70*01 P (1) Red Jungle fowl IMGT000007 MAP complement(17144..17446) (29)
IGHV1-70*02 P (24) 31 Red Jungle fowl IMGT000014 MAP complement(23876..24177) (29)
IGHV1-71 IGHV1-71*01 P (1) Red Jungle fowl IMGT000007 MAP 16647..16949 (29)
IGHV1-71*02 P (25) 31 Red Jungle fowl IMGT000014 MAP 23382..23682 (29)
IGHV1-72 IGHV1-72*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(22180..22482) (29) Red Jungle fowl IMGT000007 complement(15444..15746) (29)
IGHV1-73 IGHV1-73*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 21233..21538 (29) Red Jungle fowl IMGT000007 14497..14802 (29)
IGHV1-74 IGHV1-74*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(20102..20401) (29) Red Jungle fowl IMGT000007 complement(13366..13665) (29)
IGHV1-75 IGHV1-75*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 19316..19618 (29) Red Jungle fowl IMGT000007 12580..12882 (29)
IGHV1-76 IGHV1-76*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(18315..18617) (29) Red Jungle fowl IMGT000007 complement(11577..11879) (29)
IGHV1-77 IGHV1-77*01 P (1) 31 Red Jungle fowl IMGT000014 MAP 17745..18044 (29) Red Jungle fowl IMGT000007 11007..11306 (29)
IGHV1-78 IGHV1-78*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(16730..17032) (29) Red Jungle fowl IMGT000007 complement(9992..10294) (29)
IGHV1-79 IGHV1-79*01 P (5) 31 Red Jungle fowl IMGT000014 MAP complement(15447..15746) (29) Red Jungle fowl IMGT000007 complement(8709..9008) (29)
IGHV1-80 IGHV1-80*01 P (5) 31 Red Jungle fowl IMGT000014 MAP 13889..14188 (29) Red Jungle fowl IMGT000007 7151..7450 (29)
IGHV1-81 IGHV1-81*01 P (1) 31 Red Jungle fowl IMGT000014 MAP complement(11477..11779) (29) Red Jungle fowl IMGT000007 complement(4739..5041) (29)
IGHV1-82 IGHV1-82*01 P (3) 31 Red Jungle fowl IMGT000014 MAP 10449..10748 (29) Red Jungle fowl IMGT000007 3711..4010 (29)
IGHV1-83 IGHV1-83*01 P (26) 31 Red Jungle fowl IMGT000014 MAP complement(<9921..>10001) (29) Red Jungle fowl IMGT000007 complement(<3183..>3263) (29)
IGHV1S1 IGHV1S1*01 F M30319 [1] (30) 104..686
IGHV1S2 IGHV1S2*01 P (12) M30326 [1] (30) 93..395 (29)
IGHV1S3 IGHV1S3*01 P (12) M30327 [1] (30) 91..393 (29)
IGHV1S4 IGHV1S4*01 P (12) M30328 [1] (30) 81..383 (29)
IGHV1S5 IGHV1S5*01 P (12) M30330 [1] (30) <1..285 (29)
IGHV1S6 IGHV1S6*01 P (27) M30336 [1] (30) 7..102 (29)
IGHV1S7 IGHV1S7*01 P (28) M30338 [1] (30) 98..394 (29)
IGHV1S8 IGHV1S8*01 P (12) M30339 [1] (30) 20..322 (29)
IGHV1S9 IGHV1S9*01 P (12) M30331 [1] (30) <1..295 (29)
IGHV1S10 IGHV1S10*01 P (12) M30334 [1] (30) 8..310 (29)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) no L-PART1, no V-RS
  2. (2) no L-PART1, frameshifts in V-REGION, no V-RS
  3. (3) no L-PART1, frameshifts in FR1-IMGT, no V-RS
  4. (4) no L-PART1, STOP-CODON in FR2-IMGT, no V-RS
  5. (5) no L-PART1, no V-NONAMER
  6. (6) probably no L-PART1 (as the other Gallus gallus pseudogenes), no V-NONAMER
  7. (7) no L-PART1, no ACCEPTOR-SPLICE, frameshift in FR2-IMGT, no V-NONAMER
  8. (8) no L-PART1, frameshift in FR2-IMGT, no V-RS
  9. (9) no L-PART1, frameshift in FR1-IMGT, no V-NONAMER
  10. (10) only positions 92 to 107 from V-REGION are present
  11. (11) no L-PART1, frameshifts in FR1-IMGT, no V-NONAMER
  12. (12) probably no L-PART1 (as the other Gallus gallus pseudogenes), no V-RS
  13. (13) no L-PART1, no ACCEPTOR-SPLICE, frameshifts in FR1-IMGT, no V-RS
  14. (14) probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshifts in FR1-IMGT, no V-RS
  15. (15) no L-PART1, STOP-CODON in FR2-IMGT, no V-NONAMER
  16. (16) no L-PART1, frameshifts in V-REGION
  17. (17) probably no L-PART1 (as the other Gallus gallus pseudogenes), STOP-CODON in FR2-IMGT, no V-RS
  18. (18) no L-PART1, no ACCEPTOR-SPLICE, frameshift in FR2-IMGT, no V-RS
  19. (19) probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in FR2-IMGT, no V-RS
  20. (20) no L-PART1, frameshift in CDR2-IMGT, no V-NONAMER
  21. (21) no L-PART1, frameshift in CDR2-IMGT, no V-RS
  22. (22) no L-PART1, frameshifts in V-REGION, no V-NONAMER
  23. (23) no L-PART1, frameshift in FR3-IMGT, no V-RS
  24. (24) no L-PART1, frameshift in FR1-IMGT, no V-RS
  25. (25) no L-PART1, frameshifts in FR3-IMGT, no V-RS
  26. (26) only positions 66 to 93 from FR3-IMGT are present
  27. (27) probably no L-PART1 (as the other Gallus gallus pseudogenes), deletions in V-REGION (approximately 69 AA are missing), no V-RS
  28. (28) probably no L-PART1 and no V-NONAMER (as the other Gallus gallus pseudogenes)
  29. (29) Positions of V-REGION
  30. (30) Sequence not in locus reference sequence (assembly Gallus_gallus-5.0 and GRCg6)
IMGT references:
  1. [1] Reynaud C.A. et al., Cell 59(1):171-183 (1989). PMID: 2507167
Created:
24/04/2018
Last updated:
14/06/2018
Authors:
Perrine Pégorier
Editor:
Chantal Ginestoux