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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
IGLV1 IGLV1-1 IGLV1-1*01 F 15 Red Jungle fowl IMGT000008 MAP 30793..31296 M12317 [1] 1..506
IGLV1-1*02 F M24403 [2] (25) 467..970 M34803 [3] 45..327 (26) °
IGLV1-2 IGLV1-2*01 P (1) 15 Red Jungle fowl IMGT000008 MAP <28108..28316 (26)
IGLV1-2*02 P (1) M12437 [1] (25) <87..295 (26)
IGLV1-2*03 P (1) M15096 [4] (25) <10..218 (26)
IGLV1-3 IGLV1-3*01 P (2) 15 Red Jungle fowl IMGT000008 MAP complement(27685..27947) (26)
IGLV1-3*02 P (3) M12438 [1] (25) 134..395 (26)
IGLV1-3*03 P (4) M15097 [4] (25) complement(51..313) (26)
IGLV1-4 IGLV1-4*01 P (5) 15 Red Jungle fowl IMGT000008 MAP <26973..27148 (26) M15098 [4] <10..185 (26)
IGLV1-4*02 P (5) M12439 [1] (25) <120..295 (26)
IGLV1-5 IGLV1-5*01 P (6) 15 Red Jungle fowl IMGT000008 MAP complement(25350..25632) (26)
IGLV1-5*02 P (7) M15139 [4] (25) complement(17..298) (26)
IGLV1-6 IGLV1-6*01 P (1) 15 Red Jungle fowl IMGT000008 MAP <24112..24320 (26)
IGLV1-6*02 P (8) M15138 [4] (25) <19..227 (26)
IGLV1-7 IGLV1-7*01 P (6) 15 Red Jungle fowl IMGT000008 MAP 22680..22968 (26)
IGLV1-8 IGLV1-8*01 P (6) 15 Red Jungle fowl IMGT000008 MAP complement(22133..22421) (26)
IGLV1-8*02 P (3) M15137 [4] (25) complement(18..306) (26)
IGLV1-9 IGLV1-9*01 P (6) 15 Red Jungle fowl IMGT000008 MAP 21134..21431 (26)
IGLV1-9*02 P (3) M15140 [4] (25) 30..327 (26)
IGLV1-10 IGLV1-10*01 P (9) 15 Red Jungle fowl IMGT000008 MAP <20688..20891 (26)
IGLV1-11 IGLV1-11*01 P (6) 15 Red Jungle fowl IMGT000008 MAP complement(19824..20106) (26)
IGLV1-11*02 P (3) M15142 [4] (25) complement(47..329) (26)
IGLV1-12 IGLV1-12*01 P (10) 15 Red Jungle fowl IMGT000008 MAP 18861..19148 (26)
IGLV1-13 IGLV1-13*01 P (11) 15 Red Jungle fowl IMGT000008 MAP 18215..18504 (26)
IGLV1-14 IGLV1-14*01 P (6) 15 Red Jungle fowl IMGT000008 MAP 17544..17826 (26)
IGLV1-14*02 P (3) M15145 [4] (25) 30..312 (26)
IGLV1-15 IGLV1-15*01 P (12) 15 Red Jungle fowl IMGT000008 MAP complement(16405..16690) (26)
IGLV1-15*02 P (12) M15146 [4] (25) complement(25..310) (26)
IGLV1-16 IGLV1-16*01 P (13) 15 Red Jungle fowl IMGT000008 MAP complement(<15809..15979) (26)
IGLV1-16*02 P (14) M15148 [4] (25) complement(<10..180) (26)
IGLV1-17 IGLV1-17*01 P (15) 15 Red Jungle fowl IMGT000008 MAP <14593..14800 (26)
IGLV1-18 IGLV1-18*01 P (16) 15 Red Jungle fowl IMGT000008 MAP 14205..14505 (26)
IGLV1-19 IGLV1-19*01 P (6) 15 Red Jungle fowl IMGT000008 MAP complement(13768..14065) (26)
IGLV1-19*02 P (3) M15150 [4] (25) complement(19..316) (26)
IGLV1-20 IGLV1-20*01 P (6) 15 Red Jungle fowl IMGT000008 MAP 13032..13317 (26)
IGLV1-20*02 P (3) M15151 [4] (25) 43..328 (26)
IGLV1-21 IGLV1-21*01 P (17) 15 Red Jungle fowl IMGT000008 MAP complement(12463..12746) (26)
IGLV1-22 IGLV1-22*01 P (18) 15 Red Jungle fowl IMGT000008 MAP 11040..11322 (26)
IGLV1-22*02 P (19) M15155 [4] (25) 43..325 (26)
IGLV1-23 IGLV1-23*01 P (20) 15 Red Jungle fowl IMGT000008 MAP complement(9977..10259) (26)
IGLV1S1 IGLV1S1*01 F M15095 [4] (25) 177..680
IGLV1S2 IGLV1S2*01 P (3) M15099 [4] (25) 43..331 (26)
IGLV1S3 IGLV1S3*01 P (9) M15141 [4] (25) <22..225 (26)
IGLV1S4 IGLV1S4*01 P (21) M15143 [4] (25) 49..336 (26)
IGLV1S5 IGLV1S5*01 P (22) M15144 [4] (25) 50..339 (26)
IGLV1S6 IGLV1S6*01 P (23) M15147 [4] (25) <22..>132 (26)
IGLV1S7 IGLV1S7*01 P (3) M15149 [4] (25) 25..325 (26)
IGLV1S8 IGLV1S8*01 P (3) M15152 [4] (25) complement(47..>327) (26)
IGLV1S9 IGLV1S9*01 P (24) M15153 [4] (25) 39..>137 (26)
IGLV1S10 IGLV1S10*01 P (24) M15154 [4] (25) <1..>105 (26)
IGLV1S11 IGLV1S11*01 P (20) M15156 [4] (25) complement(19..314) (26)

MAP: Mapped reference sequences.
°: DNA genomic sequence, but not know to be rearranged or germline

IMGT notes:
  1. (1) no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing
  2. (2) no L-PART1, frameshift in V-REGION: deletion of 20 nt in FR2-IMGT, no V-RS
  3. (3) probably no L-PART1 (as the other Gallus gallus pseudogenes), no V-RS
  4. (4) probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in V-REGION: deletion of 20 nt in FR2-IMGT, no V-RS
  5. (5) no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 45A are missing, no V-NONAMER
  6. (6) no L-PART1, no V-RS
  7. (7) probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in V-REGION: deletion of 1 nt in FR2-IMGT, no V-RS
  8. (8) no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, no V-NONAMER
  9. (9) no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, frameshift in V-REGION: deletion of 1 nt in CDR3-IMGT, no V-RS
  10. (10) no L-PART1, frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  11. (11) no L-PART1
  12. (12) no V-RS
  13. (13) no L-PART1, deletions in V-REGION: AA 75 to 113 are missing, no V-RS
  14. (14) probably no L-PART1 (as the other Gallus gallus pseudogenes), STOP-CODON in V-REGION: position 69, deletions in V-REGION: AA 75 to 113 are missing, no V-RS
  15. (15) no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, no V-RS
  16. (16) no L-PART1, frameshift in V-REGION: insertion of 14 nt in FR2-IMGT
  17. (17) no L-PART1, no L-PART2, no V-NONAMER
  18. (18) no L-PART1, STOP-CODON in V-REGION: position 75, no V-RS
  19. (19) probably no L-PART1 (as the other Gallus gallus pseudogenes), STOP-CODON in V-REGION: position 75, no V-RS
  20. (20) no L-PART1, no L-PART2, no V-RS
  21. (21) probably no L-PART1 (as the other Gallus gallus pseudogenes), frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  22. (22) probably no L-PART1 (as the other Gallus gallus pseudogenes)
  23. (23) no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 26 are missing, probably no V-RS (as the other Gallus gallus pseudogenes)
  24. (24) probably no L-PART1 and no V-RS (as the other Gallus gallus pseudogenes)
  25. (25) Sequence not in locus reference sequence (assembly GRCg6a)
  26. (26) Positions of V-REGION
IMGT references:
  1. [1] Reynaud C., et al. Cell 40(2):283-291 (1985). PMID: 3917859
  2. [2] McCormack W.T., et al. Cell 56(5):785-791 (1989). PMID: 2493991
  3. [3] Parvari R., et al. Proc. Natl. Acad. Sci. U.S.A. 87(8):3072-3076 (1990). PMID: 2109325
  4. [4] Reynaud C., et al. Cell 48(3):379-388 (1987). PMID: 3100050
Created:
18/06/2018
Last updated:
23/07/2018
Authors:
Perrine Pégorier
Editor:
Chantal Ginestoux