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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Clearnose skate (Raja eglanteria) IGHV genes and alleles have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHV1 IGHV1S1 IGHVV1S1*01 P (1) 2113 U08009 [1]
IGHV1S2 IGHVV1S2*01 (F) + + VCC2 U08010 [1] #c

#c: rearranged cDNA.

IMGT notes:
  1. (1) Pseudogene because frameshift in FR1-IMGT.
IMGT references:
  1. [1] Anderson M. et al., Int. Immunology, 6, 1661-1670 (1994). PMID: 7865459
  2. [2] Roman T. et al., Immunogenetics, 43, 325-326 (1996). PMID: 9110939
Last updated:
Lorena Betancourt, Dominique Scaviner
Chantal Ginestoux