Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRGJ1 TRGJ1-1*01 P (1) A2 Abyssinian IMGT000036 MAP 27040..27133
TRGJ1-2*01 F A2 Abyssinian IMGT000036 MAP 29410..29499
TRGJ2 TRGJ2-1*01 P (1) A2 Abyssinian IMGT000036 MAP 70945..71041
TRGJ2-2*01 F A2 + + Abyssinian IMGT000036 MAP 72770..72856
TRGJ2-3*01 P (2) A2 Abyssinian IMGT000036 MAP 72106..72183 (5)
TRGJ3 TRGJ3-1*01 P (1) A2 Abyssinian IMGT000036 MAP 116646..116739
TRGJ3-2*01 F A2 + + Abyssinian IMGT000036 MAP 120023..120109
TRGJ4 TRGJ4-1*01 P (3) A2 Abyssinian IMGT000036 MAP complement(173229..173286) (5)
TRGJ5 TRGJ5-1*01 ORF (4) A2 + + Abyssinian IMGT000036 MAP complement(221548..221635)
TRGJ5-2*01 P (1) A2 Abyssinian IMGT000036 MAP complement(219199..219285)
TRGJ6 TRGJ6-1*01 ORF (4) A2 + + Abyssinian IMGT000036 MAP 271357..271444
TRGJ6-2*01 F A2 + + Abyssinian IMGT000036 MAP 274240..274343

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) STOP-CODON in J-REGION
  2. (2) frameshift in J-REGION, No J-MOTIF, No J-RS
  3. (3) frameshift in J-REGION, No J-RS
  4. (4) noncanonical J-MOTIF: FAXG instead of FGXG
  5. (5) Positions of J-REGION
Created:
19/02/2019
Last updated:
21/03/2019
Authors:
Géraldine Folch
Editors:
Chantal Ginestoux