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Citing this page: Martinez-Jean, C. et al., Exp. Clin. Immunogenet., 18, 255-279 (2001) PMID: 11872956 pdf

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGKJ1 IGKJ1*01 F 6 (30.0 cM) J1 MAP V00777 [3] A/J M15521 [5]
V00805 [6] (3)
C58 M27036 [4]
SJL M27037 [4]
SK M27038 [4]
X68864 [1] (4)
X68866 [1]
X68867 [1]
IGKJ1*02 F 6 (30.0 cM) C58 J1 MAP M15559 [2] (2)
IGKJ2 IGKJ2*01 F 6 (30.0 cM) J2 MAP V00777 [3] SJL M27037 [4]
SK M27038 [4]
X68859 [1] (4)
IGKJ2*02 F 6 (30.0 cM) C58 J2 MAP M15559 [3]
IGKJ2*03 F 6 (30.0 cM) C58 J2 MAP M27036 [4]
IGKJ3 IGKJ3*01 ORF (1) 6 (30.0 cM) J3 MAP V00777 [3] C58 M15559 [2]
M27036 [4]
SK M27038 [4]
IGKJ3*02 ORF (1) 6 (30.0 cM) SJL J3 MAP M27037 [4]
IGKJ4 IGKJ4*01 F 6 (30.0 cM) J4 MAP V00777 [3] SJL M27037 [4]
SK M27038 [4]
X68854 [1]
X68861 [1] (4)
IGKJ4*02 F 6 (30.0 cM) C58 J4 MAP M15559 [2] C58 M27036 [4]
IGKJ5 IGKJ5*01 F 6 (30.0 cM) J5 MAP V00777 [3] C58 M15559 [2]
M27036 [4]
SJL M27037 [4]
SK M27038 [4]

MAP: mapped sequences.

IMGT notes:
  1. (1) Non canonical DONOR-SPLICE: nct instead of ngt.
  2. (2) Partial J-REGION: one nucleotide missing in 5'.
  3. (3) Partial J-GENE: no J-NONAMER.
  4. (4) Partial J-REGION: 3 amino acids missing in 3'.
IMGT references:
  1. [1] Blackwell T.K. et al., EMBO J., 8, 735-742 (1989). PMID: 2785917
  2. [2] Boyd R.T. et al., Immunogenetics, 24, 150-157 (1986). PMID: 2875941
  3. [3] Max E.E. et al., J. Biol. Chem., 256, 5116-5120 (1981). PMID: 6262318
  4. [4] Ponath P.D. et al., Immunogenetics, 29, 389-396 (1989). PMID: 2567282
  5. [5] Sanz I. et al., Proc. Natl. Acad. Sci. USA, 84, 1085-1089 (1987). PMID: 3103124
  6. [6] Seidman J.G. et al., Nature, 280, 370-375 (1979). PMID: 111146
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