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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRBJ1-1 TRBJ1-1*01 F Duroc IMGT000039 [1] MAP 356761..356836
TRBJ1-2 TRBJ1-2*01 F Duroc IMGT000039 [1] MAP 356894..356967
TRBJ1-3 TRBJ1-3*01 F Duroc IMGT000039 [1] MAP 357177..357254
TRBJ1-4 TRBJ1-4*01 F (1) Duroc IMGT000039 [1] MAP 357362..357444
TRBJ1-5 TRBJ1-5*01 F Duroc IMGT000039 [1] MAP 357851..357927
TRBJ1-6 TRBJ1-6*01 F Duroc IMGT000039 [1] MAP 358091..358168
TRBJ1-7 TRBJ1-7*01 F Duroc IMGT000039 [1] MAP 358091..358168
TRBJ2-1 TRBJ2-1*01 F Duroc IMGT000039 [1] MAP 377829..377905
TRBJ2-2 TRBJ2-2*01 F Duroc IMGT000039 [1] MAP 378029..378107
TRBJ2-3 TRBJ2-3*01 F Duroc IMGT000039 [1] MAP 378252..378327
TRBJ2-4 TRBJ2-4*01 F Duroc IMGT000039 [1] MAP 378366..378441
TRBJ2-5 TRBJ2-5*01 F Duroc IMGT000039 [1] MAP 378464..378544
TRBJ2-6 TRBJ2-6*01 F Duroc IMGT000039 [1] MAP 378690..378764
TRBJ3-1 TRBJ3-1*01 F Duroc IMGT000039 [1] MAP 367514..367588
TRBJ3-2 TRBJ3-2*01 F Duroc IMGT000039 [1] MAP 367709..367785
TRBJ3-3 TRBJ3-3*01 F Duroc IMGT000039 [1] MAP 367915..367991
TRBJ3-4 TRBJ3-4*01 F Duroc IMGT000039 [1] MAP 368065..368141
TRBJ3-5 TRBJ3-5*01 F Duroc IMGT000039 [1] MAP 368185..368260
TRBJ3-6 TRBJ3-6*01 F Duroc IMGT000039 [1] MAP 368283..368362
TRBJ3-7 TRBJ3-7*01 F (2) Duroc IMGT000039 [1] MAP 368508..368582

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) Noncanonical J-HEPTAMER: gactctg instead of ggctgtg, noncanonical J-NONAMER: tgttttccc instead of ggtttttgt
  2. (2) Noncanonical J-HEPTAMER: ctgtgtg instead of ggctgtg, noncanonical J-NONAMER: agtttgcct instead of ggtttttgt
IMGT references:
  1. [1] Serafina M. et al., Front. Immunol. (2018).
Created:
06/02/2019
Last updated:
07/03/2019
Authors:
Imène Chentli
Editor:
Chantal Ginestoux