Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1 TRAJ1*01 P (1) 7 IMGT000013 962291..962379
TRAJ2 TRAJ2 TRAJ2*01 F 7 IMGT000013 961325..961418
TRAJ3 TRAJ3 TRAJ3*01 F 7 IMGT000013 960755..960844
TRAJ4 TRAJ4 TRAJ4*01 F 7 IMGT000013 959788..959878
TRAJ5 TRAJ5 TRAJ5*01 F 7 IMGT000013 958233..958320
TRAJ6 TRAJ6 TRAJ6*01 F 7 + + IMGT000013 957060..957149
TRAJ7 TRAJ7 TRAJ7*01 F 7 IMGT000013 955615..955699
TRAJ8 TRAJ8 TRAJ8*01 F 7 IMGT000013 954142..954229
TRAJ9 TRAJ9 TRAJ9*01 F 7 IMGT000013 953547..953635
TRAJ10 TRAJ10 TRAJ10*01 F 7 + + IMGT000013 951595..951686
TRAJ11 TRAJ11 TRAJ11*01 F 7 IMGT000013 950598..950685
TRAJ12 TRAJ12 TRAJ12*01 F 7 + + IMGT000013 950036..950123
TRAJ13 TRAJ13 TRAJ13*01 F 7 + + IMGT000013 949178..949268
TRAJ14 TRAJ14 TRAJ14*01 ORF (2) 7 IMGT000013 948416..948495
TRAJ15 TRAJ15 TRAJ15*01 ORF (3) 7 IMGT000013 947717..947804
TRAJ16 TRAJ16 TRAJ16*01 F 7 IMGT000013 946599..946686
TRAJ17 TRAJ17 TRAJ17*01 F 7 IMGT000013 945216..945306
TRAJ18 TRAJ18 TRAJ18*01 F 7 + + IMGT000013 944022..944115
TRAJ19 TRAJ19 TRAJ19*01 ORF (4) 7 IMGT000013 943640..943722
TRAJ20 TRAJ20 TRAJ20*01 ORF (5) 7 IMGT000013 942709..942793
TRAJ21 TRAJ21 TRAJ21*01 F 7 IMGT000013 941997..942079
TRAJ22 TRAJ22 TRAJ22*01 F 7 + + IMGT000013 940444..940534
TRAJ23 TRAJ23 TRAJ23*01 F 7 + + IMGT000013 938822..938912
TRAJ24 TRAJ24 TRAJ24*01 F 7 IMGT000013 938392..938482
TRAJ25 TRAJ25 TRAJ25*01 F 7 IMGT000013 937213..937300
TRAJ26 TRAJ26 TRAJ26*01 F 7 IMGT000013 936844..936931
TRAJ27 TRAJ27 TRAJ27*01 F 7 IMGT000013 934662..934748
TRAJ28 TRAJ28 TRAJ28*01 F 7 IMGT000013 934012..934105
TRAJ29 TRAJ29 TRAJ29*01 F 7 + + IMGT000013 932655..932742
TRAJ30 TRAJ30 TRAJ30*01 F 7 IMGT000013 931568..931652
TRAJ31 TRAJ31 TRAJ31*01 F 7 + + IMGT000013 929690..929774
TRAJ32 TRAJ32 TRAJ32*01 F 7 + + IMGT000013 928064..928157
TRAJ33 TRAJ33 TRAJ33*01 F 7 IMGT000013 927329..927413
TRAJ34 TRAJ34 TRAJ34*01 F 7 + + IMGT000013 926327..926410
TRAJ35 TRAJ35 TRAJ35*01 F 7 IMGT000013 925308..925394
TRAJ36 TRAJ36 TRAJ36*01 F 7 + + IMGT000013 923764..923850
TRAJ37 TRAJ37 TRAJ37*01 F 7 IMGT000013 922713..922802
TRAJ38 TRAJ38 TRAJ38*01 F 7 + + IMGT000013 921187..921276
TRAJ39 TRAJ39 TRAJ39*01 F 7 + + IMGT000013 920561..920651
TRAJ40 TRAJ40 TRAJ40*01 F 7 + + IMGT000013 918641..918729
TRAJ41 TRAJ41 TRAJ41*01 F 7 IMGT000013 916612..916701
TRAJ42 TRAJ42 TRAJ42*01 F 7 IMGT000013 915842..915935
TRAJ43 TRAJ43 TRAJ43*01 F 7 IMGT000013 914861..914942
TRAJ44 TRAJ44 TRAJ44*01 F 7 IMGT000013 913766..913856
TRAJ45 TRAJ45 TRAJ45*01 F 7 + + IMGT000013 912870..912963
TRAJ46 TRAJ46 TRAJ46*01 F 7 IMGT000013 912348..912438
TRAJ47 TRAJ47 TRAJ47*01 F 7 IMGT000013 911788..911872
TRAJ48 TRAJ48 TRAJ48*01 F 7 IMGT000013 909866..909956
TRAJ49 TRAJ49 TRAJ49*01 F 7 IMGT000013 908873..908956
TRAJ50 TRAJ50 TRAJ50*01 F 7 IMGT000013 907992..908079
TRAJ51 TRAJ51 TRAJ51*01 P (6) 7 IMGT000013 906577..906667 CH250-384L17 IMGT000026 145158..145248
TRAJ52 TRAJ52 TRAJ52*01 F 7 + + IMGT000013 905625..905721
TRAJ52*02 F 7 IMGT000026 144206..144302
TRAJ53 TRAJ53 TRAJ53*01 F 7 + + IMGT000013 902412..902505 CH250-384L17 IMGT000026 140993..141086
TRAJ54 TRAJ54 TRAJ54*01 F (7) 7 + + IMGT000013 901209..901296 CH250-384L17 IMGT000026 140258..140345
TRAJ55 TRAJ55 TRAJ55*01 P (8) 7 IMGT000013 900610..900694 CH250-384L17 IMGT000026 139658..139742
TRAJ56 TRAJ56 TRAJ56*01 F 7 IMGT000013 898425..898514 CH250-384L17 IMGT000026 137473..137562
TRAJ57 TRAJ57 TRAJ57*01 F 7 + + IMGT000013 897762..897852 CH250-384L17 IMGT000026 136810..136900
TRAJ58 TRAJ58 TRAJ58*01 F (9) 7 IMGT000013 896604..896694 CH250-384L17 IMGT000026 135652..135742
TRAJ59 TRAJ59 TRAJ59*01 P (10) 7 IMGT000013 895466..895553 CH250-384L17 IMGT000026 134514..134600
TRAJ60 TRAJ60 TRAJ60*01 F 7 IMGT000013 895219..895303 CH250-384L17 IMGT000026 134267..134351
TRAJ61 TRAJ61 TRAJ61*01 P (6) 7 IMGT000013 894226..894313 CH250-384L17 IMGT000026 133274..133361
IMGT notes:
  1. (1) STOP-CODON in J-REGION: position 8
  2. (2) noncanonical J-MOTIF: SGXG instead of FGXG, unexpected J-SPACER length: 7 nt instead of 12 nt
  3. (3) noncanonical J-MOTIF: FVXG instead of FGXG
  4. (4) noncanonical J-MOTIF: FGXS instead of FGXG, noncanonical J-NONAMER: tgattttgc instead of ggtttttgt, unexpected J-SPACER length: 7 nt instead of 12 nt and noncanonical J-HEPTAMER: agatgtg instead of cactgtg
  5. (5) noncanonical J-MOTIF: FGXR instead of FGXG
  6. (6) no DONOR-SPLICE
  7. (7) unexpected J-SPACER length: 9 nt instead of 12 nt, however this J-GENE has been gound rearranged
  8. (8) STOP-CODON in J-REGION: position 4
  9. (9) STOP-CODON at position 1 (first 5' codon of germline J-REGION) may disappear during rearrangements
  10. (10) Pseudogene due to one deletion of 1 nt between 'a' and 'c' at position 11, causing a frameshift with two STOP-CODON in J-REGION at positions 15 and 17
Created:
27/06/2018
Last updated:
31/10/2018
Authors:
Viviane Nguefack Ngoune
Editor:
Chantal Ginestoux