IMGT Repertoire (IG and TR)

Gene table: Rhesus monkey (Macaca mulatta) TRAV

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• Locus representation: Rhesus monkey (Macaca mulatta) TRA/TRD
• Potential germline repertoire: Rhesus monkey (Macaca mulatta) TRAV and TRAJ genes on chromosome 7
• Potential germline repertoire: Rhesus monkey (Macaca mulatta) TRDV, TRDD and TRDJ genes on chromosome 7
• Locus description: Rhesus monkey (Macaca mulatta) TRA
• Locus description: Rhesus monkey (Macaca mulatta) TRD

• Fct: FUNCTIONALITY
  • F: Functional
  • P: Pseudogene
  • ORF: Open Reading Frame
• R: Rearranged
• T: Transcribed
• Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

• IMGT gene name to get the corresponding IMGT/GENE-DB entry,
• IMGT allele name to see the corresponding Alignments of alleles,
• accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT notes:

1. (1) noncanonical V-NONAMER: ccagaattc instead of acccaaacc
2. (2) noncanonical V-NONAMER: acaaaattc instead of acccaaacc
3. (3) noncanonical V-NONAMER: cagttttcc instead of acccaaacc, however this V-GENE has been found rearranged
4. (4) STOP-CODON in V-REGION: position 44
5. (5) STOP-CODON in L-PART1, no DONOR-SPLICE, STOP-CODON in V-REGION: position 26 and 41 and frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
6. (6) noncanonical ACCEPTOR-SPLICE: natnn instead of nagnn, noncanonical V-NONAMER: gccatgact instead of acccaaacc
7. (7) no L-PART1
8. (8) positions in V-REGION
9. (9) STOP-CODON in V-REGION: position 58 and frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
10. (10) frameshift in L-PART2, STOP-CODON in V-REGION: position 2 and 44 and frameshifts in V-REGION: deletion of 2 nt and 1 nt respectively in CDR2-IMGT and FR3-IMGT
11. (11) frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
12. (12) noncanonical V-NONAMER: gtccaaatc instead of acccaaacc
13. (13) STOP-CODON in L-PART1, no ACCEPTOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT, no V-RS
14. (14) frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
15. (15) noncanonical V-NONAMER: cttgaaacc instead acccaaacc
16. (16) no 2nd-CYS: Gln instead of Cys, noncanonical DONOR-SPLICE: nat instead of ngt, noncanonical V-NONAMER: cctaaagct instead of acccaaacc
17. (17) frameshifts in V-REGION
18. (18) frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
19. (19) no L-PART1 and frameshifts in V-REGION: insertion of 2 nt in CDR1-IMGT and deletion of 4 nt and 1 nt respectively in CDR1-IMGT and FR2-IMGT

More information:

• Gene table: Rhesus monkey (Macaca mulatta) TRAJ
• Gene table: Rhesus monkey (Macaca mulatta) TRAC
• Gene table: Rhesus monkey (Macaca mulatta) TRDV
• Gene table: Rhesus monkey (Macaca mulatta) TRDD
• Gene table: Rhesus monkey (Macaca mulatta) TRDJ
• Gene table: Rhesus monkey (Macaca mulatta) TRDC

See also (IMGT Scientific chart):

• IMGT reference sequences
• IMGT/LIGM-DB standardized labels
• IMGT gene name nomenclature for IG and TR of human and other vertebrates
• IMGT allele nomenclature for sequence polymorphisms
• IMGT annotation rules

Created: 27/06/2018
Last updated: 04/10/2018
Authors: Viviane Nguefack Ngoune
Editor: Chantal Ginestoux

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