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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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The sequenced Spotted wobbegong (Orectolobus maculatus) IGHV genes are rearranged to IGHJ associated to IGHN in different cassettes. The cassettes are of the type 2, described for the Nurse shark (Ginglymostoma cirratum) cassettes, as they are characterized by a V-GENE having an amino acid other than Cys in 40 and a J-GENE having an amino acid other than Cys in 118.

cDNAs have been included in this table as they are informative for the gene content of the corresponding genomic cassettes.
M1 and M2 exons are not shown if not yet isolated.

Cassette Cassette type Clone name Gene name Exon Accession numbers
1 #c 7E-23 IGHV2S1 AF336087
IGHD1 AF336087
IGHJ1 AF336087
IGHN1 CH1 AF336087
CH2
CH3
CH4
CH5
2 #c 7E-51 IGHV2S2 AF336088
IGHD2 AF336088
IGHJ2 AF336088
IGHN2 CH1 AF336088
CH2
CH3
CH4
CH5
3 #c 7E-54 IGHV2S3 AF336089
IGHD3 AF336089
IGHJ3 AF336089
IGHN3 CH1 AF336089
CH2
CH3
CH4
CH5
4 #c 7E-60 IGHV2S4 AF336090
IGHD4 AF336090
IGHJ4 AF336090
IGHN4 CH1 AF336090
CH2
CH3
CH4
CH5
5 #c 7E-68 IGHV2S5 AF336091
IGHD5 AF336091
IGHJ5 AF336091
IGHN5 CH1 AF336091
CH2
CH3
CH4
CH5
6 #c 7E-80 IGHV2S6 AF336092
IGHD6 AF336092
IGHJ6 AF336092
IGHN6 CH1 AF336092
CH2
CH3
CH4
CH5
7 #c 7E-93 IGHV2S7 AF336093
IGHD7 AF336093
IGHJ7 AF336093
IGHN7 CH1 AF336093
CH2
CH3
CH4
CH5
8 #c 7R-1 IGHV2S8 AF336094
IGHD8 AF336094
IGHJ8 AF336094
IGHN8 CH1
CH2
CH3
CH4
CH5

#c: rearranged cDNA.

Created:
28/01/2002
Last updated:
29/06/2011
Authors:
Dominique Scaviner
Editors:
Chantal Ginestoux