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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRAC TRAC*01 F 10 + Hereford CM008177.2 EX1 IMGT000049 MAP 3316272..3316544 Hereford Btau3.1_Chr10.30 [1] (1) complement(316981..317253)
EX2 IMGT000049 MAP 3318563..3318607 Hereford Btau3.1_Chr10.30 [1] (1) complement(314918..314962)
EX3 IMGT000049 MAP 3319918..3320025 Hereford Btau3.1_Chr10.30 [1] (1) complement(313492..313599)
EX4UTR IMGT000049 MAP 3320683..3321226 Hereford Btau3.1_Chr10.30 [1] (1) complement(312325..312834)
TRAC*02 F EX1 AY227782 [2] (2) 53816..54088
EX2 AY227782 [2] (2) 56106..56150
EX3 AY227782 [2] (2) 57468..57575
EX4UTR AY227782 [2] (2) 58233..58742

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
  2. (2) Sequence not in locus reference sequence (assembly ARS-UCD1.2)
IMGT references:
  1. [1] Herzig C.T. et al., BMC Genomics, 11, 100 (2010). PMID: 20144200
  2. [2] Conrad M.L. et al., Unpublished.
Created:
23/07/2010
Last updated:
14/10/2020
Authors:
Amandine Lacan, Perrine Pégorier