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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Positions in the sequence: limits from the first nucleotide of J-REGION to the last nucleotide.

IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence (J-REGION) Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRAJ1 TRAJ1*01 F Btau3.1_Chr10.30 [1] 320653-320714
TRAJ2 TRAJ2*01 F Btau3.1_Chr10.30 [1] 321620-321685
TRAJ3 TRAJ3*01 F Btau3.1_Chr10.30 [1] 322166-322224
TRAJ4 TRAJ4*01 ORF Btau3.1_Chr10.30 [1] (5) 323136-323198
TRAJ5 TRAJ5*01 F Btau3.1_Chr10.30 [1] 326325-326384
TRAJ6 TRAJ6*01 F Btau3.1_Chr10.30 [1] 328094-328149
TRAJ7 TRAJ7*01 F Btau3.1_Chr10.30 [1] 329639-329698
TRAJ8 TRAJ8*01 F Btau3.1_Chr10.30 [1] 332427-332486
TRAJ9 TRAJ9*01 F Btau3.1_Chr10.30 [1] 332886-332948
TRAJ10 TRAJ10*01 F Btau3.1_Chr10.30 [1] 333897-333956
TRAJ11 TRAJ11*01 F Btau3.1_Chr10.30 [1] 334458-334517
TRAJ12 TRAJ12*01 ORF Btau3.1_Chr10.30 [1] (4) 336100-336156
TRAJ13 TRAJ13*01 F Btau3.1_Chr10.30 [1] 338087-338147
TRAJ14 TRAJ14*01 F Btau3.1_Chr10.30 [1] 339704-339766
TRAJ15 TRAJ15*01 F Btau3.1_Chr10.30 [1] 340811-340876
TRAJ16 TRAJ16*01 F Btau3.1_Chr10.30 [1] 342172-342229
TRAJ17 TRAJ17*01 F Btau3.1_Chr10.30 [1] 342883-342937
TRAJ18 TRAJ18*01 F Btau3.1_Chr10.30 [1] 344407-344469
TRAJ19 TRAJ19*01 F Btau3.1_Chr10.30 [1] 345526-345588
TRAJ20 TRAJ20*01 F Btau3.1_Chr10.30 [1] 345967-346029
TRAJ21 TRAJ21*01 F Btau3.1_Chr10.30 [1] 346822-346881
TRAJ22 TRAJ22*01 F Btau3.1_Chr10.30 [1] 349288-349346
TRAJ23 TRAJ23*01 F Btau3.1_Chr10.30 [1] 349936-350001
TRAJ24 TRAJ24*01 F Btau3.1_Chr10.30 [1] 350927-350986
TRAJ25 TRAJ25*01 F Btau3.1_Chr10.30 [1] 351990-352048
TRAJ26 TRAJ26*01 F Btau3.1_Chr10.30 [1] 354084-354141
TRAJ27 TRAJ27*01 ORF Btau3.1_Chr10.30 [1] (3) 355889-355954
TRAJ28 TRAJ28*01 F Btau3.1_Chr10.30 [1] 356633-356689
TRAJ29 TRAJ29*01 F Btau3.1_Chr10.30 [1] 357323-357379
TRAJ30 TRAJ30*01 ORF Btau3.1_Chr10.30 [1] (2) 358353-358408
TRAJ31 TRAJ31*01 F Btau3.1_Chr10.30 [1] 360530-360591
TRAJ32 TRAJ32*01 F Btau3.1_Chr10.30 [1] 362032-362093
TRAJ33 TRAJ33*01 F Btau3.1_Chr10.30 [1] 362671-362733
TRAJ34 TRAJ34*01 F Btau3.1_Chr10.30 [1] 364783-364839
TRAJ35 TRAJ35*01 F Btau3.1_Chr10.30 [1] 366481-366541
TRAJ36 TRAJ36*01 F Btau3.1_Chr10.30 [1] 366950-367015
TRAJ37 TRAJ37*01 F Btau3.1_Chr10.30 [1] 367738-367794
TRAJ38 TRAJ38*01 F Btau3.1_Chr10.30 [1] 369040-369101
TRAJ39 TRAJ39*01 F Btau3.1_Chr10.30 [1] 369885-369947
TRAJ40 TRAJ40*01 F Btau3.1_Chr10.30 [1] 370397-370459
TRAJ41 TRAJ41*01 F Btau3.1_Chr10.30 [1] 373161-373223
TRAJ42 TRAJ42*01 F Btau3.1_Chr10.30 [1] 374051-374106
TRAJ43 TRAJ43*01 F Btau3.1_Chr10.30 [1] 374938-374993
TRAJ44 TRAJ44*01 F Btau3.1_Chr10.30 [1] 377283-377351
TRAJ45 TRAJ45*01 F Btau3.1_Chr10.30 [1] 380497-380562
TRAJ46 TRAJ46*01 F Btau3.1_Chr10.30 [1] 381151-381201
TRAJ47 TRAJ47*01 P Btau3.1_Chr10.30 [1] (1) 383907-383964
TRAJ48 TRAJ48*01 F Btau3.1_Chr10.30 [1] 384536-384598
TRAJ49 TRAJ49*01 F Btau3.1_Chr10.30 [1] 385774-385836
TRAJ50 TRAJ50*01 F Btau3.1_Chr10.30 [1] 386939-386992
TRAJ51 TRAJ51*01 F Btau3.1_Chr10.30 [1] 387173-387229
TRAJ52 TRAJ52*01 P Btau3.1_Chr10.30 [1] (1) 388139-388199

#c: rearranged cDNA.

Other notes:
Bovine (Bos taurus) germline sequences were extracted from The Bovine Genome Database, Assembly 3.1 (Btau3.1), based on [1].
The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore.

Sequences were annotated and entered in IMGT/LIGM-DB and flat files were generated by IMGT®.
IMGT notes:
  1. (1) Pseudogene because of STOP-CODON in J-REGION
  2. (2) ORF because of leucine instead of J-PHE
  3. (3) ORF because of unusual J-NONAMER
  4. (4) ORF because of lack of J-SPACER and J-NONAMER
  5. (5) ORF because of unusual J-HEPTAMER
IMGT references:
  1. [1] Herzig C.T. et al., BMC Genomics, 11, 100 (2010). PMID: 20144200
See also (IMGT Scientific chart):