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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1*01 F 10 Hereford CM008177.2 IMGT000049 MAP 3312783..3312872 AY227782 [1] 50355..50444
Hereford Btau3.1_Chr10.30 [2] (6) complement(320653..320742)
TRAJ2 TRAJ2*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3311812..3311905 AY227782 [1] 49384..49477
Hereford Btau3.1_Chr10.30 [2] (6) complement(321620..321713)
TRAJ3 TRAJ3*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3311273..3311359 AY227782 [1] 48845..48931
Hereford Btau3.1_Chr10.30 [2] (6) complement(322166..322252)
TRAJ4 TRAJ4*01 F 10 Hereford CM008177.2 IMGT000049 MAP 3310299..3310389 Hereford Btau3.1_Chr10.30 [2] (6) complement(323136..323226)
TRAJ4*02 P (1) AY227782 [1] (7) 47872..47961
TRAJ5 TRAJ5*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3307113..3307200 AY227782 [1] 44685..44772
Hereford Btau3.1_Chr10.30 [2] (6) complement(326325..326412)
TRAJ6 TRAJ6*01 F 10 Hereford CM008177.2 IMGT000049 MAP 3305923..3306012 AY227782 [1] 43495..43584
Hereford Btau3.1_Chr10.30 [2] (6) complement(327513..327602)
TRAJ7 TRAJ7*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3305348..3305431 AY227782 [1] 42920..43003
Hereford TRAJ6*01 Btau3.1_Chr10.30 [2] (6) complement(328094..328177)
TRAJ8-1 TRAJ8-1*01 F 10 + + Hereford TRAJ8*01, CM008177.2 IMGT000049 MAP 3303799..3303886 TRAJ8*01 AY227782 [1] 41371..41458
Hereford TRAJ7*01, TRAJ8*01 Btau3.1_Chr10.30 [2] (6) complement(329639..329726)
TRAJ8-2 TRAJ8-2*01 F 10 + + Hereford TRAJ10*01, CM008177.2 IMGT000049 MAP 3301011..3301098 Hereford TRAJ8*01, TRAJ10*01 Btau3.1_Chr10.30 [2] (6) complement(332427..332514)
TRAJ8-2*02 F TRAJ10*02 AY227782 [1] (7) 38583..38670
TRAJ9 TRAJ9*01 F 10 Hereford CM008177.2 IMGT000049 MAP 3303209..3303297 AY227782 [1] 40781..40869
Hereford Btau3.1_Chr10.30 [2] (6) complement(330228..330316)
TRAJ10 TRAJ10*01 F 10 Hereford TRAJ11*01, CM008177.2 IMGT000049 MAP 3300550..3300639 TRAJ11*01 AY227782 [1] 38122..38211
Hereford TRAJ9*01, TRAJ11*01 Btau3.1_Chr10.30 [2] (6) complement(332886..332975)
TRAJ11 TRAJ11*01 F 10 Hereford TRAJ12*01, CM008177.2 IMGT000049 MAP 3299541..3299628 Hereford TRAJ10*01, TRAJ12*01 Btau3.1_Chr10.30 [2] (6) complement(333897..333984)
TRAJ11*02 F TRAJ12*02 AY227782 [1] (7) 37113..37200
TRAJ12 TRAJ12*01 F 10 + + Hereford TRAJ13*01, CM008177.2 IMGT000049 MAP 3298980..3299067 TRAJ13*01 AY227782 [1] 36552..36639
Hereford TRAJ11*01, TRAJ13*01 Btau3.1_Chr10.30 [2] (6) complement(334458..334545)
TRAJ13 TRAJ13*01 P (2) 10 Hereford TRAJ14*01, CM008177.2 IMGT000049 MAP 3298152..3298212 (8) TRAJ14*01 AY227782 [1] 35721..35781 (8)
TRAJ13*02 P (2) 10 Hereford TRAJ14*02 Btau3.1_Chr10.30 [2] (6,7) complement(335316..335376) (8)
TRAJ14 TRAJ14*01 P (2) 10 Hereford TRAJ15*01, CM008177.2 IMGT000049 MAP 3297372..3297428 (8) Hereford TRAJ12*01, TRAJ15*01 Btau3.1_Chr10.30 [2] (6) complement(336100..336156) (8)
TRAJ14*02 P (2) TRAJ15*02 AY227782 [1] (7) 35008..35064 (8)
TRAJ15 TRAJ15*01 F 10 Hereford TRAJ16*01, CM008177.2 IMGT000049 MAP 3296449..3296536 TRAJ16*01 AY227782 [1] 34085..34172
Hereford TRAJ16*01 Btau3.1_Chr10.30 [2] (6) complement(336992..337079)
TRAJ15*02 P (1) TRAJ16*02 AJ245969 [3] (7) 1421..1509
TRAJ16 TRAJ16*01 F 10 + + Hereford TRAJ17*01, CM008177.2 IMGT000049 MAP 3295353..3295441 TRAJ17*01 AJ245969 [3] 325..413
AY227782 [1] 32989..33077
Hereford TRAJ13*01, TRAJ17*01 Btau3.1_Chr10.30 [2] (6) complement(338087..338175)
TRAJ17 TRAJ17*01 F 10 + + Hereford TRAJ18*01, CM008177.2 IMGT000049 MAP 3293734..3293824 TRAJ18*01 AY227782 [1] 31370..31460
Hereford TRAJ14*01, TRAJ18*01 Btau3.1_Chr10.30 [2] (6) complement(339704..339794)
TRAJ18 TRAJ18*01 F 10 + + Hereford TRAJ19*01, CM008177.2 IMGT000049 MAP 3292624..3292717 TRAJ19*01 AY227782 [1] 30260..30353
Hereford TRAJ15*01, TRAJ19*01 Btau3.1_Chr10.30 [2] (6) complement(340811..340904)
TRAJ19 TRAJ19*01 P (2) 10 Hereford TRAJ20*01, CM008177.2 IMGT000049 MAP 3292268..3292325 (8) TRAJ20*01 AY227782 [1] 29904..29961 (8)
Hereford TRAJ20*01 Btau3.1_Chr10.30 [2] (6) complement(341203..341260) (8)
TRAJ20 TRAJ20*01 F 10 + + Hereford TRAJ21*01, CM008177.2 IMGT000049 MAP 3291271..3291356 TRAJ21*01 AY227782 [1] 28910..28995
Hereford TRAJ16*01, TRAJ21*01 Btau3.1_Chr10.30 [2] (6) complement(342172..342257)
TRAJ21 TRAJ21*01 F 10 + + Hereford TRAJ22*01, CM008177.2 IMGT000049 MAP 3290565..3290647 TRAJ22*01 AY227782 [1] 28200..28282
Hereford TRAJ17*01, TRAJ22*01 Btau3.1_Chr10.30 [2] (6) complement(342883..342965)
TRAJ22 TRAJ22*01 F 10 + + Hereford TRAJ23*01, CM008177.2 IMGT000049 MAP 3289033..3289123 TRAJ23*01 AY227782 [1] 26668..26758
Hereford TRAJ18*01, TRAJ23*01 Btau3.1_Chr10.30 [2] (6) complement(344407..344497)
TRAJ23 TRAJ23*01 F 10 + + Hereford TRAJ24*01, CM008177.2 IMGT000049 MAP 3287914..3288004 TRAJ24*01 AY227782 [1] 25549..25639
Hereford TRAJ19*01, TRAJ24*01 Btau3.1_Chr10.30 [2] (6) complement(345526..345616)
TRAJ24 TRAJ24*01 F 10 + + Hereford TRAJ25*01, CM008177.2 IMGT000049 MAP 3287473..3287563 TRAJ25*01 AY227782 [1] 25108..25198
Hereford TRAJ20*01, TRAJ25*01 Btau3.1_Chr10.30 [2] (6) complement(345967..346057)
TRAJ25 TRAJ25*01 F 10 Hereford TRAJ26*01, CM008177.2 IMGT000049 MAP 3286621..3286708 Hereford TRAJ21*01, TRAJ26*01 Btau3.1_Chr10.30 [2] (6) complement(346822..346909)
TRAJ25*02 F + + TRAJ26*02 AY227782 [1] (7) 24257..24344
TRAJ26 TRAJ26*01 ORF (3) 10 + + Hereford TRAJ27*01, CM008177.2 IMGT000049 MAP 3286323..3286410 TRAJ27*01 AY227782 [1] 23959..24046
Hereford TRAJ27*01 Btau3.1_Chr10.30 [2] (6) complement(347120..347207)
TRAJ27 TRAJ27*01 F 10 + + Hereford TRAJ28*01, CM008177.2 IMGT000049 MAP 3284156..3284242 TRAJ28*01 AY227782 [1] 21792..21878
Hereford TRAJ22*01, TRAJ28*01 Btau3.1_Chr10.30 [2] (6) complement(349288..349374)
TRAJ28 TRAJ28*01 F 10 + + Hereford TRAJ29*01, CM008177.2 IMGT000049 MAP 3283501..3283594 TRAJ29*01 AY227782 [1] 21137..21230
Hereford TRAJ23*01, TRAJ29*01 Btau3.1_Chr10.30 [2] (6) complement(349936..350029)
TRAJ29 TRAJ29*01 F 10 + + Hereford TRAJ30*01, CM008177.2 IMGT000049 MAP 3282516..3282603 TRAJ30*01 AY227782 [1] 20152..20239
Hereford TRAJ24*01, TRAJ30*01 Btau3.1_Chr10.30 [2] (6) complement(350927..351014)
TRAJ30 TRAJ30*01 F 10 + + Hereford TRAJ31*01, CM008177.2 IMGT000049 MAP 3281454..3281540 TRAJ31*01 AY227782 [1] 19090..19176
Hereford TRAJ25*01, TRAJ31*01 Btau3.1_Chr10.30 [2] (6) complement(351990..352076)
TRAJ31 TRAJ31*01 F 10 + + Hereford TRAJ32*01, CM008177.2 IMGT000049 MAP 3279361..3279446 Hereford TRAJ26*01, TRAJ32*01 Btau3.1_Chr10.30 [2] (6) complement(354084..354169)
TRAJ31*02 F TRAJ32*02 AY227782 [1] (7) 16997..17082
TRAJ32 TRAJ32*01 F 10 + + Hereford TRAJ33*01, CM008177.2 IMGT000049 MAP 3277548..3277641 TRAJ33*01 AY227782 [1] 15184..15277
Hereford TRAJ27*01, TRAJ33*01 Btau3.1_Chr10.30 [2] (6) complement(355889..355982)
TRAJ33 TRAJ33*01 F 10 + + Hereford TRAJ34*01, CM008177.2 IMGT000049 MAP 3276813..3276897 TRAJ34*01 AY227782 [1] 14449..14533
Hereford TRAJ28*01, TRAJ34*01 Btau3.1_Chr10.30 [2] (6) complement(356633..356717)
TRAJ34 TRAJ34*01 F 10 + + Hereford TRAJ35*01, CM008177.2 IMGT000049 MAP 3276123..3276207 TRAJ35*01 AY227782 [1] 13759..13843
Hereford TRAJ29*01, TRAJ35*01 Btau3.1_Chr10.30 [2] (6) complement(357323..357407)
TRAJ35 TRAJ35*01 ORF (3) 10 Hereford TRAJ36*01, CM008177.2 IMGT000049 MAP 3275094..3275177 TRAJ36*01 AY227782 [1] 12730..12813
Hereford TRAJ30*01, TRAJ36*01 Btau3.1_Chr10.30 [2] (6) complement(358353..358436)
TRAJ36 TRAJ36*01 F 10 + + Hereford TRAJ37*01, CM008177.2 IMGT000049 MAP 3273624..3273712 TRAJ37*01 AY227782 [1] 11255..11343
Hereford TRAJ37*01 Btau3.1_Chr10.30 [2] (6) complement(359818..359906)
TRAJ37 TRAJ37*01 F 10 + + Hereford TRAJ38*01, CM008177.2 IMGT000049 MAP 3272911..3273000 Hereford TRAJ31*01, TRAJ38*01 Btau3.1_Chr10.30 [2] (6) complement(360530..360619)
TRAJ37*02 F TRAJ38*02 AY227782 [1] (7) 10542..10631
TRAJ38 TRAJ38*01 F 10 + + Hereford TRAJ39*01, CM008177.2 IMGT000049 MAP 3271409..3271498 TRAJ39*01 AY227782 [1] 9039..9128
Hereford TRAJ32*01, TRAJ39*01 Btau3.1_Chr10.30 [2] (6) complement(362032..362121)
TRAJ39 TRAJ39*01 F 10 Hereford TRAJ40*01, CM008177.2 IMGT000049 MAP 3270769..3270859 Hereford TRAJ33*01, TRAJ40*01 Btau3.1_Chr10.30 [2] (6) complement(362671..362761)
TRAJ39*02 F TRAJ40*02 AY227782 [1] (7) 8399..8489
TRAJ40 TRAJ40*01 F 10 + + Hereford TRAJ41*01, CM008177.2 IMGT000049 MAP 3268663..3268747 TRAJ41*01 AY227782 [1] 6297..6381
Hereford TRAJ34*01, TRAJ41*01 Btau3.1_Chr10.30 [2] (6) complement(364783..364867)
TRAJ41 TRAJ41*01 F 10 Hereford TRAJ42*01, CM008177.2 IMGT000049 MAP 3266961..3267049 Hereford TRAJ35*01, TRAJ42*01 Btau3.1_Chr10.30 [2] (6) complement(366481..366569)
TRAJ41*02 F TRAJ42*02 AY227782 [1] (7) 4594..4682
TRAJ42 TRAJ42*01 F 10 + + Hereford TRAJ43*01, CM008177.2 IMGT000049 MAP 3266487..3266580 TRAJ43*01 AY227782 [1] #g 4162..4219 (8)
Hereford TRAJ36*01, TRAJ43*01 Btau3.1_Chr10.30 [2] (6) complement(366950..367043)
TRAJ43 TRAJ43*01 F 10 + + Hereford TRAJ44*01, CM008177.2 IMGT000049 MAP 3265708..3265792 Hereford TRAJ37*01, TRAJ44*01 Btau3.1_Chr10.30 [2] (6) complement(367738..367822)
TRAJ44 TRAJ44*01 F 10 + + Hereford TRAJ45*01, CM008177.2 IMGT000049 MAP 3264401..3264490 Hereford TRAJ38*01, TRAJ45*01 Btau3.1_Chr10.30 [2] (6) complement(369040..369129)
TRAJ45 TRAJ45*01 F 10 + + Hereford TRAJ46*01, CM008177.2 IMGT000049 MAP 3263555..3263645
TRAJ45*02 F 10 Hereford TRAJ39*01, TRAJ46*02 Btau3.1_Chr10.30 [2] (6,7) complement(369885..369975)
TRAJ46 TRAJ46*01 F 10 Hereford TRAJ47*01, CM008177.2 IMGT000049 MAP 3263043..3263133 Hereford TRAJ40*01, TRAJ47*01 Btau3.1_Chr10.30 [2] (6) complement(370397..370487)
TRAJ47 TRAJ47*01 F 10 + + Hereford TRAJ48*01, CM008177.2 IMGT000049 MAP 3262305..3262389 Hereford TRAJ48*01 Btau3.1_Chr10.30 [2] (6) complement(371141..371225)
TRAJ48 TRAJ48*01 F 10 + + Hereford TRAJ49*01, CM008177.2 IMGT000049 MAP 3260279..3260369 Hereford TRAJ41*01, TRAJ49*01 Btau3.1_Chr10.30 [2] (6) complement(373161..373251)
TRAJ49 TRAJ49*01 F 10 + + Hereford TRAJ50*01, CM008177.2 IMGT000049 MAP 3259396..3259479 Hereford TRAJ42*01, TRAJ50*01 Btau3.1_Chr10.30 [2] (6) complement(374051..374134)
TRAJ50 TRAJ50*01 F 10 + + Hereford TRAJ51*01, CM008177.2 IMGT000049 MAP 3258509..3258592 Hereford TRAJ43*01, TRAJ51*01 Btau3.1_Chr10.30 [2] (6) complement(374938..375021)
TRAJ52 TRAJ52*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3256151..3256247 Hereford TRAJ44*01 Btau3.1_Chr10.30 [2] (6) complement(377283..377379)
TRAJ53 TRAJ53*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3252941..3253034 Hereford TRAJ45*01 Btau3.1_Chr10.30 [2] (6) complement(380497..380590)
TRAJ54 TRAJ54*01 F (4) 10 + + Hereford CM008177.2 IMGT000049 MAP 3252289..3252380 Hereford TRAJ46*01 Btau3.1_Chr10.30 [2] (6) complement(381151..381242)
TRAJ56 TRAJ56*01 F (4) 10 Hereford TRAJ55*01, CM008177.2 IMGT000049 MAP 3249539..3249624 Hereford TRAJ47*01, TRAJ55*01 Btau3.1_Chr10.30 [2] (6) complement(383907..383992)
TRAJ57 TRAJ57*01 F 10 + + Hereford TRAJ56*01, CM008177.2 IMGT000049 MAP 3248905..3248995 Hereford TRAJ48*01, TRAJ56*01 Btau3.1_Chr10.30 [2] (6) complement(384536..384626)
TRAJ58 TRAJ58*01 F 10 + + Hereford TRAJ57*01, CM008177.2 IMGT000049 MAP 3247667..3247757 Hereford TRAJ49*01, TRAJ57*01 Btau3.1_Chr10.30 [2] (6) complement(385774..385864)
TRAJ59 TRAJ59*01 F 10 Hereford TRAJ58*01, CM008177.2 IMGT000049 MAP 3246512..3246592 Hereford TRAJ50*01, TRAJ58*01 Btau3.1_Chr10.30 [2] (6) complement(386939..387019)
TRAJ60 TRAJ60*01 F 10 Hereford TRAJ59*01, CM008177.2 IMGT000049 MAP 3246274..3246358 Hereford TRAJ51*01, TRAJ59*01 Btau3.1_Chr10.30 [2] (6) complement(387173..387257)
TRAJ61 TRAJ61*01 P (5) 10 Hereford TRAJ60*01, CM008177.2 IMGT000049 MAP 3245304..3245392 Hereford TRAJ52*01, TRAJ60*01 Btau3.1_Chr10.30 [2] (6) complement(388139..388227)

MAP: Mapped reference sequences.
#g: rearranged genomic DNA

IMGT notes:
  1. (1) frameshift in J-REGION
  2. (2) no J-NONAMER
  3. (3) noncanonical J-MOTIF
  4. (4) STOP-CODON at position 1 (first 5' codon of germline J-REGION) may disappear during rearrangements
  5. (5) STOP-CODON in J-REGION
  6. (6) The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
  7. (7) Sequence not in locus reference sequence (assembly ARS-UCD1.2)
  8. (8) Positions of J-REGION
IMGT references:
  1. [1] Conrad M.L. et al., Unpublished.
  2. [2] Herzig C.T. et al., BMC Genomics, 11, 100 (2010). PMID: 20144200
  3. [3] Ewald D. et al., Unpublished.
Created:
23/07/2010
Last updated:
14/10/2020
Authors:
Amandine Lacan, Perrine Pégorier