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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
TRDD TRDD1 TRDD1*01 ORF (1) 10 + + Hereford CM008177.2 IMGT000049 MAP 3123803..3123878 Hereford Btau3.1_ChrUn.158 [1] (3) complement(4564..4639)
TRDD2 TRDD2*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3135857..3135936 Hereford TRDD1*01 Btau3.1_Chr10.30 [1] (3) complement(504561..504640)
TRDD3 TRDD3*01 ORF (2) 10 + + Hereford CM008177.2 IMGT000049 MAP 3141967..3142040 Hereford Btau3.1_Chr10.30 [1] (3) complement(498457..498530)
TRDD4 TRDD4*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3151710..3151791 Hereford TRDD2*01 Btau3.1_Chr10.30 [1] (3) complement(488704..488785)
TRDD5 TRDD5*01 ORF (1) 10 + + Hereford CM008177.2 IMGT000049 MAP 3159434..3159509 Hereford Btau3.1_Chr10.30 [1] (3) complement(480987..481062)
TRDD6 TRDD6*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3171198..3171279 Hereford Btau3.1_Chr10.30 [1] (3) complement(469221..469302)
TRDD7 TRDD7*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3190795..3190874 Hereford TRDD3*01 Btau3.1_Chr10.30 [1] (3) complement(449621..449700)
TRDD8 TRDD8*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3199249..3199324 Hereford TRDD4*01 Btau3.1_Chr10.30 [1] (3) complement(441202..441277)
TRDD9 TRDD9*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3216354..3216431 Hereford TRDD5*01 Btau3.1_Chr10.30 [1] (3) complement(417711..417788)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical 3'D-NONAMER
  2. (2) noncanonical 3'D-HEPTAMER, noncanonical 3'D-NONAMER
  3. (3) The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
IMGT references:
  1. [1] Herzig C.T. et al., BMC Genomics, 11, 100 (2010).. PMID: 20144200
Created:
22/07/2010
Last updated:
14/10/2020
Authors:
Amandine Lacan, Perrine Pégorier