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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRDJ1 TRDJ1*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3217344..3217425 Hereford Btau3.1_Chr10.30 [1] (2) complement(416717..416798)
TRDJ2 TRDJ2*01 ORF (1) 10 Hereford CM008177.2 IMGT000049 MAP 3225103..3225185 Hereford Btau3.1_Chr10.30 [1] (2) complement(408959..409041)
TRDJ3 TRDJ3*01 F 10 Hereford CM008177.2 IMGT000049 MAP 3227460..3227546 Hereford Btau3.1_Chr10.30 [1] (2) complement(406598..406684)
TRDJ4 TRDJ4*01 F 10 + + Hereford CM008177.2 IMGT000049 MAP 3223699..3223775 Hereford TRDJ2*01 Btau3.1_Chr10.30 [1] (2) complement(410369..410445)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-HEPTAMER, noncanonical J-MOTIF
  2. (2) The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
IMGT references:
  1. [1] Herzig C.T. et al., BMC Genomics, 11, 100 (2010).. PMID: 20144200
Created:
23/07/2010
Last updated:
14/10/2020
Authors:
Amandine Lacan, Perrine Pégorier