Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

Positions in the sequence: limits from the first nucleotide of V-REGION to the last nucleotide.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRDV1 TRDV1S1 TRDV1S1*01 F TRDV1aq Btau3.1_Chr10.28 [1] 20379-20670
TRDV1S1*02 (F) + + EF175176 [2] #c 1-180
TRDV1S2-1 TRDV1S2-1*01 ORF TRDV1ar Btau3.1_Chr10.28 [1] (1) 58464-58723
TRDV1S2-2 TRDV1S2-2*01 ORF TRDV1bp Btau3.1_ChrUn.4123 [1] (1) 15238-15497
TRDV1S3 TRDV1S3*01 F TRDV1as Btau3.1_Chr10.28 [1] 84845-85131
TRDV1S4-1 TRDV1S4-1*01 F TRDV1at Btau3.1_Chr10.28 [1] 97464-97750
TRDV1S4-2 TRDV1S4-2*01 F TRDV1al Btau3.1_ChrUn.857 [1] 4450-4736
TRDV1S4-3 TRDV1S4-3*01 F TRDV1bi Btau3.1_ChrUn.3566 [1] 19332-19618
TRDV1S5-1 TRDV1S5-1*01 F TRDV1au Btau3.1_Chr10.28 [1] 115740-116026
TRDV1S5-2 TRDV1S5-2*01 F TRDV1an Btau3.1_ChrUn.857 [1] 28653-28939
TRDV1S6-1 TRDV1S6-1*01 F TRDV1av Btau3.1_Chr10.28 [1] 133121-133401
TRDV1S6-2 TRDV1S6-2*01 F TRDV1ao Btau3.1_ChrUn.857 [1] 50488-50768
TRDV1S7-1 TRDV1S7-1*01 F TRDV1aw Btau3.1_Chr10.28 [1] 198285-198577
TRDV1S7-2 TRDV1S7-2*01 F TRDV1be Btau3.1_ChrUn.5529 [1] 9601-9893
TRDV1S8 TRDV1S8*01 F TRDV1ax Btau3.1_Chr10.28 [1] 245707-245999
TRDV1S8*02 (F) + + BC142390 #c 127-417
TRDV1S8*03 (F) + + U73388 [4] #c 61-348
TRDV1S9 TRDV1S9*01 ORF TRDV1x Btau3.1_ChrUn.41 [1] (2) 161524-161816
TRDV1S10 TRDV1S10*01 F TRDV1s Btau3.1_ChrUn.41 [1] 188111-188397
TRDV1S10*02 (F) + + EF175175 [2] #c 61-345
TRDV1S10*03 (P) + + U73393 [4] (3) #c 61-342
TRDV1S10*04 (F) + + D16116 #c 61-342
TRDV1S11 TRDV1S11*01 F TRDV1bg Btau3.1_ChrUn.41 [1] 250526-250849
TRDV1S11*02 (F) + + BC147858 #c 128-451
TRDV1S12 TRDV1S12*01 F TRDV1w Btau3.1_ChrUn.41 [1] 273033-273319
TRDV1S13-1 TRDV1S13-1*01 F TRDV1v Btau3.1_ChrUn.41 [1] 282660-282946
TRDV1S13-2 TRDV1S13-2*01 F TRDV1ab Btau3.1_ChrUn.41 [1] (4) 630001-630287
TRDV1S14 TRDV1S14*01 F TRDV1u Btau3.1_ChrUn.41 [1] 295264-295550
TRDV1S15-1 TRDV1S15-1*01 F TRDV1t Btau3.1_ChrUn.41 [1] 313634-313923
TRDV1S15-2 TRDV1S15-2*01 F TRDV1y Btau3.1_ChrUn.41 [1] 662168-662457
TRDV1S16 TRDV1S16*01 F TRDV1aa Btau3.1_ChrUn.41 [1] 480313-480605
TRDV1S16*02 (F) + + U73387 [4] #c 61-348
TRDV1S17 TRDV1S17*01 F TRDV1z Btau3.1_ChrUn.41 [1] 642620-642906
TRDV1S17*02 (F) + + BC142026 #c 115-399
TRDV1S17*03 (F) + + D90419 [6] #c 1-136
TRDV1S18-1 TRDV1S18-1*01 F TRDV1e Btau3.1_ChrUn.139 [1] 16733-17025
TRDV1S18-2 TRDV1S18-2*01 F TRDV1d Btau3.1_ChrUn.139 [1] 75036-75328
TRDV1S19 TRDV1S19*01 F TRDV1b Btau3.1_ChrUn.139 [1] 303827-304112
TRDV1S19*02 (F) + + BC142356 #c 120-404
TRDV1S19*03 (F) + + D16115 #c 61-345
TRDV1S19*04 (F) + + U73390 [4] #c 61-342
TRDV1S20 TRDV1S20*01 F TRDV1a Btau3.1_ChrUn.139 [1] 315180-315465
TRDV1S20*02 (F) + + D13655 #c 61-345
TRDV1S20*03 (F) + + D13656 #c 61-345
TRDV1S20*04 (F) + + U73380 #c 61-342
TRDV1S20*05 (F) + + U73381 #c 61-342
TRDV1S21-1 TRDV1S21-1*01 F TRDV1c Btau3.1_ChrUn.139 [1] 356855-357146
TRDV1S21-2 TRDV1S21-2*01 F TRDV1bf Btau3.1_ChrUn.4913 [1] 10675-10966
TRDV1S22 TRDV1S22*01 ORF TRDV1f Btau3.1_ChrUn.139 [1] (1) 373578-373837
TRDV1S23 TRDV1S23*01 F TRDV1m Btau3.1_ChrUn.221 [1] 6077-6363
TRDV1S23*02 (F) + + FJ907528 [3] #c 1-261
TRDV1S24 TRDV1S24*01 F TRDV1n Btau3.1_ChrUn.221 [1] 30283-30569
TRDV1S25-1 TRDV1S25-1*01 ORF TRDV1o Btau3.1_ChrUn.221 [1] (1) 174860-175152
TRDV1S25-2 TRDV1S25-2*01 ORF TRDV1ai Btau3.1_ChrUn.129 [1] (1) 391236-391528
TRDV1S26 TRDV1S26*01 F TRDV1p Btau3.1_ChrUn.221 [1] 220755-221047
TRDV1S27-1 TRDV1S27-1*01 F TRDV1q Btau3.1_ChrUn.221 [1] 240734-241026
TRDV1S27-2 TRDV1S27-2*01 F TRDV1ay Btau3.1_ChrUn.2578 [1] 31691-31983
TRDV1S28 TRDV1S28*01 F TRDV1r Btau3.1_ChrUn.221 [1] 264437-264729
TRDV1S28*02 (F) + + D13661 #c 61-351
TRDV1S29 TRDV1S29*01 F TRDV1aj Btau3.1_ChrUn.129 [1] 5916-6208
TRDV1S29*02 (F) + + BC147856 #c 163-453
TRDV1S30 TRDV1S30*01 F TRDV1ah Btau3.1_ChrUn.129 [1] 300563-300855
TRDV1S31 TRDV1S31*01 F TRDV1ag Btau3.1_ChrUn.129 [1] 331685-331976
TRDV1S32 TRDV1S32*01 F TRDV1af Btau3.1_ChrUn.129 [1] 414771-415056
TRDV1S32*02 (F) + + BC147864 #c 120-407
TRDV1S32*03 (F) + + FJ907525 [1] #c 1-261
TRDV1S32*04 (P) + + D16114 (5) #c 61-342
TRDV1S33 TRDV1S33*01 F TRDV1ac Btau3.1_ChrUn.158 [1] 178923-179208
TRDV1S33*02 (F) + + BC142412 #c 122-406
TRDV1S33*03 (F) + + U73391 [4] #c 61-342
TRDV1S33*04 (F) + + D13657 #c 61-346
TRDV1S34 TRDV1S34*01 ORF TRDV1ae Btau3.1_ChrUn.158 [1] (1) 209540-209799
TRDV1S34*02 (F) + + BC147864 (6) #c 160-417
TRDV1S34*03 (F) + + FJ907525 [1] (6) #c 25-282
TRDV1S35 TRDV1S35*01 F TRDV1ad Btau3.1_ChrUn.158 [1] 237111-237403
TRDV1S35*02 (F) + + U73386 [4] #c 61-348
TRDV1S36 TRDV1S36*01 F TRDV1g Btau3.1_ChrUn.298 [1] 28844-29136
TRDV1S37 TRDV1S37*01 F TRDV1i Btau3.1_ChrUn.298 [1] 207039-207325
TRDV1S38 TRDV1S38*01 F TRDV1h Btau3.1_ChrUn.298 [1] 223732-224017
TRDV1S38*02 (F) + + FJ907519 [3] #c 1-261
TRDV1S38*03 (F) + + FJ907520 [3] #c 1-261
TRDV1S38*04 (F) + + FJ907521 [3] #c 1-261
TRDV1S38*05 (F) + + FJ907522 [3] (7) #c 1-261
TRDV1S38*06 (F) + + FJ907523 [3] #c 1-261
TRDV1S38*07 (F) + + FJ907526 [3] #c 1-261
TRDV1S38*08 (F) + + D16112 #c 61-345
TRDV1S38*09 (F) + + D13660 #c 61-345
TRDV1S39 TRDV1S39*01 F TRDV1j Btau3.1_ChrUn.298 [1] 263596-263882
TRDV1S39*02 (F) + + D13659 #c 61-345
TRDV1S40 TRDV1S40*01 F TRDV1am Btau3.1_ChrUn.857 [1] 19769-20055
TRDV1S40*02 (F) + + U73382 #c 61-342
TRDV1S41 TRDV1S41*01 F TRDV1ap Btau3.1_ChrUn.857 [1] 74300-74592
TRDV1S42 TRDV1S42*01 F TRDV1ba Btau3.1_ChrUn.1227 [1] 39695-39987
TRDV1S42*02 (F) + + U73389 [4] #c 61-348
TRDV1S43 TRDV1S43*01 F TRDV1bb Btau3.1_ChrUn.1227 [1] 62992-63287
TRDV1S44 TRDV1S44*01 P TRDV1az Btau3.1_ChrUn.1227 [1] (3) 79925-80211
TRDV1S44*02 (F) + + BC113229 #c 123-407
TRDV1S44*03 (F) + + FJ907527 [3] #c 1-261
TRDV1S44*04 (F) + + U73384 [4] #c 61-342
TRDV1S45 TRDV1S45*01 F TRDV1k Btau3.1_ChrUn.1758 [1] 21943-22229
TRDV1S46 TRDV1S46*01 F TRDV1l Btau3.1_ChrUn.1758 [1] 58028-58314
TRDV1S47-1 TRDV1S47-1*01 F TRDV1bc Btau3.1_ChrUn.2188 [1] 10751-11031
TRDV1S47-2 TRDV1S47-2*01 F TRDV1bl Btau3.1_ChrUn.3970 [1] 9665-9945
TRDV1S48 TRDV1S48*01 F TRDV1bd Btau3.1_ChrUn.2188 [1] 33963-34255
TRDV1S48*02 (F) + + BC104586 #c 76-360
TRDV1S49 TRDV1S49*01 F TRDV1bh Btau3.1_ChrUn.3566 [1] 5242-5528
TRDV1S50 TRDV1S50*01 F TRDV1bm Btau3.1_ChrUn.10149 [1] 1843-2135
TRDV1S51-1 TRDV1S51-1*01 F TRDV1bn Btau3.1_ChrUn.3458 [1] 16972-17264
TRDV1S51-2 TRDV1S51-2*01 F TRDV1bo Btau3.1_ChrUn.2982 [1] 15447-15739
TRDV1S52-1 TRDV1S52-1*01 F TRDV1bj Btau3.1_ChrUn.3620 [1] 815-1129
TRDV1S52-2 TRDV1S52-2*01 F TRDV1bk Btau3.1_ChrUn.3793 [1] 4192-4506
TRDV1S53 TRDV1S53*01 (F) + + EF175171 [2] #c 1-224
TRDV1S54 TRDV1S54*01 (F) + + EF175172 [2] #c 61-339
TRDV1S55 TRDV1S55*01 (F) + + FJ907524 [3] #c 1-261
TRDV1S56 TRDV1S56*01 (F) + + D16113 [7] #c 61-348
TRDV2 TRDV2S1 TRDV2S1*01 F TRDV2-1 Btau3.1_ChrUn.158 [1] 345140-345427
TRDV2S2 TRDV2S2*01 F TRDV2-2 Btau3.1_ChrUn.1907 [1] 44222-44509
TRDV2S3 TRDV2S3*01 F TRDV2-2b Btau3.1_ChrUn.1948 [1] 11532-11819
TRDV2S4 TRDV2S4*01 (F) + + DQ275147 [5] #c 70-342
TRDV3 TRDV3S1 TRDV3S1*01 F TRDV3-1 Btau3.1_ChrUn.7503 [1] 3142-3429
TRDV3S2 TRDV3S2*01 F TRDV3-1b Btau3.1_ChrUn.1002 [1] 77815-78102
TRDV3S3 TRDV3S3*01 (F) + + DQ275148 [5] #c 61-333
TRDV4 TRDV4 TRDV4*01 F TRDV4 Btau3.1_Chr10.30 [1] 396951-397245
TRDV3 TRDV4 TRDV4*02 (F) + + DQ275149 [5] #c 52-333
TRDV5 TRDV5 TRDV5*01 (F) + + EF175174 [2] 1-105

#c: rearranged cDNA.

Other notes:
Bovine (Bos taurus) germline sequences were extracted from The Bovine Genome Database, Assembly 3.1 (Btau3.1), based on [1].
The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore.

Sequences were annotated and entered in IMGT/LIGM-DB and flat files were generated by IMGT®.
IMGT notes:
  1. (1) ORF because no CDR2-IMGT, and FR3-IMGT partial in 5'
  2. (2) ORF because no INIT-CODON
  3. (3) Pseudogene because of STOP-CODON in V-REGION
  4. (4) Functional but putative limit in 5' for L-PART1 because begins by unknown nucleotides
  5. (5) Pseudogene because of frameshifts in J-REGION
  6. (6) No CDR2-IMGT, and FR3-IMGT partial in 5'
  7. (7) Functional but no CONSERVED-TRP
IMGT references:
  1. [1] Herzig C.T. et al., BMC Genomics, 11, 100-100 (2010). PMID: 20144200
  2. [2] Van Rhijn I. et al., Mol Immunol., 44, 3155-3161 (2007). PMID: 17418895
  3. [3] Blumerman S.L. et al., Immunogenetics, 58, 680-692 (2006). PMID: 16799810
  4. [4] Hein W.R. et al., Immunology, 91, 58-64 (1997). PMID: 9203966
  5. [5] Herzig C.T. et al., Immunogenetics, 58, 746-757 (2006). PMID: 16896832
  6. [6] Takeuchi N. et al., Immunogenetics, 35, 89-96 (1992). PMID: 1346526
  7. [7] Ishiguro N. et al., Immunogenetics, 38, 437-443 (1993). PMID: 8406615
See also (IMGT Scientific chart):