Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
IGLJ1 IGLJ1*01 F D3 Abyssinian IMGT000038 MAP 840157..840222
IGLJ2 IGLJ2*01 F D3 Abyssinian IMGT000038 MAP 844133..844198
IGLJ3 IGLJ3*01 ORF (1) D3 Abyssinian IMGT000038 MAP 849731..849796
IGLJ4 IGLJ4*01 F D3 Abyssinian IMGT000038 MAP 852921..852986
IGLJ5 IGLJ5*01 F D3 Abyssinian IMGT000038 MAP 859966..860031
IGLJ6 IGLJ6*01 F D3 Abyssinian IMGT000038 MAP 865705..865770
IGLJ7 IGLJ7*01 F D3 Abyssinian IMGT000038 MAP 879307..879372
IGLJ8 IGLJ8*01 F D3 Abyssinian IMGT000038 MAP 884881..884946
IGLJ9 IGLJ9*01 F D3 Abyssinian IMGT000038 MAP 888847..888912
IGLJ10 IGLJ10*01 F D3 Abyssinian IMGT000038 MAP 894398..894463
IGLJ11 IGLJ11*01 F D3 Abyssinian IGLJ8 IMGT000038 MAP 898364..898429
IGLJ12 IGLJ12*01 ORF (2) D3 Abyssinian IGLJ9 IMGT000038 MAP 902222..902287

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-HEPTAMER: cgcaatg instead of cacagtg, noncanonical J-MOTIF: FSXG instead of FGXG, noncanonical DONOR-SPLICE: nat instead of ngt
  2. (2) noncanonical J-MOTIF: FNXG instead of FGXG
Created:
05/03/2019
Last updated:
06/03/2019
Authors:
Perrine Pégorier
Editors:
Chantal Ginestoux