Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1 TRAJ1*01 ORF (1) B3 Abyssinian IMGT000045 MAP 808629..808718
TRAJ2 TRAJ2 TRAJ2*01 F B3 Abyssinian IMGT000045 MAP 807616..807709
TRAJ3 TRAJ3 TRAJ3*01 ORF (2) B3 Abyssinian IMGT000045 MAP 807067..807156
TRAJ4 TRAJ4 TRAJ4*01 ORF (2) B3 Abyssinian IMGT000045 MAP 806099..806189
TRAJ5 TRAJ5 TRAJ5*01 F B3 Abyssinian IMGT000045 MAP 803091..803178
TRAJ6 TRAJ6 TRAJ6*01 ORF (2) B3 Abyssinian IMGT000045 MAP 801958..802047
TRAJ7 TRAJ7 TRAJ7*01 F B3 Abyssinian IMGT000045 MAP 800438..800524
TRAJ8 TRAJ8 TRAJ8*01 F B3 Abyssinian IMGT000045 MAP 798675..798762
TRAJ9 TRAJ9 TRAJ9*01 F B3 Abyssinian IMGT000045 MAP 798096..798184
TRAJ10 TRAJ10 TRAJ10*01 ORF (2) B3 Abyssinian IMGT000045 MAP 796252..796343
TRAJ11 TRAJ11 TRAJ11*01 F B3 Abyssinian IMGT000045 MAP 795266..795354
TRAJ12 TRAJ12 TRAJ12*01 ORF (1) B3 Abyssinian IMGT000045 MAP 794696..794784
TRAJ13 TRAJ13 TRAJ13*01 F B3 Abyssinian IMGT000045 MAP 793829..793917
TRAJ14 TRAJ14 TRAJ14*01 ORF (2) B3 Abyssinian IMGT000045 MAP 793102..793186
TRAJ15 TRAJ15 TRAJ15*01 F B3 Abyssinian IMGT000045 MAP 792403..792490
TRAJ16 TRAJ16 TRAJ16*01 F B3 Abyssinian IMGT000045 MAP 791047..791134
TRAJ17 TRAJ17 TRAJ17*01 ORF (3) B3 Abyssinian IMGT000045 MAP 789649..789738
TRAJ18 TRAJ18 TRAJ18*01 F B3 Abyssinian IMGT000045 MAP 788481..788574
TRAJ19 TRAJ19 TRAJ19*01 ORF (4) B3 Abyssinian IMGT000045 MAP 788099..788184
TRAJ20 TRAJ20 TRAJ20*01 F B3 Abyssinian IMGT000045 MAP 787114..787198
TRAJ21 TRAJ21 TRAJ21*01 F B3 Abyssinian IMGT000045 MAP 786370..786452
TRAJ22 TRAJ22 TRAJ22*01 F B3 Abyssinian IMGT000045 MAP 784790..784880
TRAJ23 TRAJ23 TRAJ23*01 F B3 Abyssinian IMGT000045 MAP 782927..783017
TRAJ24 TRAJ24 TRAJ24*01 F B3 Abyssinian IMGT000045 MAP 782490..782581
TRAJ25 TRAJ25 TRAJ25*01 F B3 Abyssinian IMGT000045 MAP 781666..781753
TRAJ26 TRAJ26 TRAJ26*01 F B3 Abyssinian IMGT000045 MAP 781343..781430
TRAJ27 TRAJ27 TRAJ27*01 F B3 Abyssinian IMGT000045 MAP 779180..779266
TRAJ28 TRAJ28 TRAJ28*01 ORF (1) B3 Abyssinian IMGT000045 MAP 778530..778623
TRAJ29 TRAJ29 TRAJ29*01 F B3 Abyssinian IMGT000045 MAP 777536..777620
TRAJ30 TRAJ30 TRAJ30*01 F (5) B3 Abyssinian IMGT000045 MAP 776446..776531
TRAJ31 TRAJ31 TRAJ31*01 ORF (2) B3 Abyssinian IMGT000045 MAP 774576..774660
TRAJ32 TRAJ32 TRAJ32*01 F B3 Abyssinian IMGT000045 MAP 772987..773080
TRAJ33 TRAJ33 TRAJ33*01 F B3 Abyssinian IMGT000045 MAP 772258..772342
TRAJ34 TRAJ34 TRAJ34*01 F B3 Abyssinian IMGT000045 MAP 771579..771664
TRAJ35 TRAJ35 TRAJ35*01 F B3 Abyssinian IMGT000045 MAP 770532..770622
TRAJ36 TRAJ36 TRAJ36*01 F B3 Abyssinian IMGT000045 MAP 769009..769096
TRAJ37 TRAJ37 TRAJ37*01 ORF (1) B3 Abyssinian IMGT000045 MAP 768053..768142
TRAJ38 TRAJ38 TRAJ38*01 F B3 Abyssinian IMGT000045 MAP 766301..766390
TRAJ39 TRAJ39 TRAJ39*01 F B3 Abyssinian IMGT000045 MAP 765655..765745
TRAJ40 TRAJ40 TRAJ40*01 F B3 Abyssinian IMGT000045 MAP 763766..763853
TRAJ41 TRAJ41 TRAJ41*01 ORF (6) B3 Abyssinian IMGT000045 MAP 762091..762180
TRAJ42 TRAJ42 TRAJ42*01 F B3 Abyssinian IMGT000045 MAP 761585..761678
TRAJ43 TRAJ43 TRAJ43*01 F B3 Abyssinian IMGT000045 MAP 760768..760852
TRAJ44 TRAJ44 TRAJ44*01 F B3 Abyssinian IMGT000045 MAP 759677..759767
TRAJ45 TRAJ45 TRAJ45*01 F B3 Abyssinian IMGT000045 MAP 758790..758883
TRAJ46 TRAJ46 TRAJ46*01 ORF (7) B3 Abyssinian IMGT000045 MAP 758293..758383
TRAJ47 TRAJ47 TRAJ47*01 F B3 Abyssinian IMGT000045 MAP 757763..757839
TRAJ48 TRAJ48 TRAJ48*01 F B3 Abyssinian IMGT000045 MAP 755571..755661
TRAJ49 TRAJ49 TRAJ49*01 F B3 Abyssinian IMGT000045 MAP 754774..754860
TRAJ50 TRAJ50 TRAJ50*01 F B3 Abyssinian IMGT000045 MAP 753866..753953
TRAJ51 TRAJ51 TRAJ51*01 P (8) B3 Abyssinian IMGT000045 MAP 752554..752644
TRAJ52 TRAJ52 TRAJ52*01 F B3 Abyssinian IMGT000045 MAP 751508..751604
TRAJ53 TRAJ53 TRAJ53*01 F B3 Abyssinian IMGT000045 MAP 748574..748660
TRAJ54 TRAJ54 TRAJ54*01 F B3 Abyssinian IMGT000045 MAP 747921..748013
TRAJ55 TRAJ55 TRAJ55*01 P (9) B3 Abyssinian IMGT000045 MAP 747358..747415 (10)
TRAJ56 TRAJ56 TRAJ56*01 F B3 Abyssinian IMGT000045 MAP 745076..745165
TRAJ57 TRAJ57 TRAJ57*01 ORF (6) B3 Abyssinian IMGT000045 MAP 744448..744538
TRAJ58 TRAJ58 TRAJ58*01 ORF (6) B3 Abyssinian IMGT000045 MAP 743070..743160
TRAJ59 TRAJ59 TRAJ59*01 F B3 Abyssinian IMGT000045 MAP 741943..742030
TRAJ60 TRAJ60 TRAJ60*01 ORF (2) B3 Abyssinian IMGT000045 MAP 741695..741777
TRAJ61 TRAJ61 TRAJ61*01 ORF (11) B3 Abyssinian IMGT000045 MAP 740680..740767
TRAJ62 TRAJ62 TRAJ62*01 ORF (12) B3 Abyssinian IMGT000045 MAP 804832..804932
TRAJ63 TRAJ63 TRAJ63*01 ORF (13) B3 Abyssinian TRAJ64 IMGT000045 MAP 750650..750726
TRAJ64 TRAJ64 TRAJ64*01 P (14) B3 Abyssinian TRAJ65 IMGT000045 MAP 740974..741057

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-HEPTAMER
  2. (2) noncanonical J-NONAMER
  3. (3) noncanonical J-MOTIF and noncanonical J-HEPTAMER
  4. (4) noncanonical J-HEPTAMER and noncanonical J-NONAMER
  5. (5) the first codon of the germline J-REGION is a STOP-CODON which may disappear during rearrangements
  6. (6) noncanonical J-MOTIF
  7. (7) noncanonical J-MOTIF and noncanonical DONOR-SPLICE
  8. (8) J-MOTIF very degenerate
  9. (9) no J-RS, no DONOR-SPLICE and frameshift in J-REGION
  10. (10) position of J-REGION
  11. (11) noncanonical DONOR-SPLICE and noncanonical J-MOTIF
  12. (12) noncanonical DONOR-SPLICE, noncanonical J-HEPTAMER and noncanonical J-NONAMER
  13. (13) noncanonical J-MOTIF, noncanonical J-HEPTAMER and noncanonical J-NONAMER
  14. (14) STOP-CODON in J-REGION
Created:
29/05/2019
Last updated:
17/07/2019
Authors:
Viviane Nguefack Ngoune
Editors:
Chantal Ginestoux