Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
TRAV2 TRAV2 TRAV2*01 ORF (1) B3 Abyssinian IMGT000045 MAP 9834..10618
TRAV3 TRAV3 TRAV3*01 F B3 Abyssinian IMGT000045 MAP 18306..18773
TRAV4 TRAV4 TRAV4*01 ORF (1) B3 Abyssinian IMGT000045 MAP 25749..26575
TRAV5 TRAV5 TRAV5*01 F B3 Abyssinian IMGT000045 MAP 33682..34457
TRAV6 TRAV6 TRAV6*01 F B3 Abyssinian IMGT000045 MAP 40523..41092
TRAV8 TRAV8-1 TRAV8-1*01 ORF (1) B3 Abyssinian IMGT000045 MAP 21020..21536
TRAV8-2 TRAV8-2*01 F B3 Abyssinian IMGT000045 MAP 54400..54911
TRAV8-3 TRAV8-3*01 F B3 Abyssinian IMGT000045 MAP 66462..66946
TRAV8-4 TRAV8-4*01 F B3 Abyssinian IMGT000045 MAP 161864..162348
TRAV8-5 TRAV8-5*01 F B3 Abyssinian IMGT000045 MAP 252837..253331
TRAV8-6 TRAV8-6*01 F B3 Abyssinian IMGT000045 MAP 331853..332353
TRAV8-7 TRAV8-7*01 F B3 Abyssinian IMGT000045 MAP 369486..369996
TRAV9 TRAV9-1 TRAV9-1*01 P (2) B3 Abyssinian IMGT000045 MAP 48846..49126 (3)
TRAV9-2 TRAV9-2*01 ORF (4) B3 Abyssinian IMGT000045 MAP 59355..59901
TRAV9-3 TRAV9-3*01 F B3 Abyssinian IMGT000045 MAP 112816..113315
TRAV9-4 TRAV9-4*01 F B3 Abyssinian IMGT000045 MAP 129428..129927
TRAV9-5 TRAV9-5*01 F B3 Abyssinian IMGT000045 MAP 156390..156886
TRAV9-6 TRAV9-6*01 P (5) B3 Abyssinian IMGT000045 MAP 187359..187853
TRAV9-7 TRAV9-7*01 F B3 Abyssinian IMGT000045 MAP 228575..229074
TRAV10 TRAV10 TRAV10*01 F B3 Abyssinian IMGT000045 MAP 236273..236878
TRAV11 TRAV11 TRAV11*01 P (6) B3 Abyssinian IMGT000045 MAP 238844..239021 (3)
TRAV12 TRAV12 TRAV12*01 F B3 Abyssinian IMGT000045 MAP 248538..249121
TRAV13 TRAV13-1 TRAV13-1*01 F B3 Abyssinian IMGT000045 MAP 85704..86220
TRAV13-2 TRAV13-2*01 P (14) B3 Abyssinian IMGT000045 MAP 176686..176966 (3)
TRAV13-3 TRAV13-3*01 F B3 Abyssinian IMGT000045 MAP 211347..211890
TRAV14 TRAV14-1 TRAV14-1*01 P (7) B3 Abyssinian IMGT000045 MAP 101841..102389
TRAV14-2 TRAV14-2*01 P (8) B3 Abyssinian IMGT000045 MAP 123788..124311
TRAV14-3 TRAV14-3*01 P (9) B3 Abyssinian IMGT000045 MAP 147629..147913 (3)
TRAV14-4 TRAV14-4*01 P (10) B3 Abyssinian IMGT000045 MAP 184918..185206 (3)
TRAV14-5 TRAV14-5*01 F B3 Abyssinian IMGT000045 MAP 215699..216253
TRAV16 TRAV16 TRAV16*01 F B3 Abyssinian IMGT000045 MAP 258478..258954
TRAV17 TRAV17 TRAV17*01 F B3 Abyssinian IMGT000045 MAP 264589..265166
TRAV18 TRAV18 TRAV18*01 F B3 Abyssinian IMGT000045 MAP 271270..271778
TRAV19 TRAV19 TRAV19*01 F B3 Abyssinian IMGT000045 MAP 286036..286630
TRAV20 TRAV20 TRAV20*01 P (11) B3 Abyssinian IMGT000045 MAP 303096..303632
TRAV21 TRAV21 TRAV21*01 F B3 Abyssinian IMGT000045 MAP 315779..316350
TRAV22 TRAV22 TRAV22*01 ORF (12) B3 Abyssinian IMGT000045 MAP 337325..337912
TRAV23 TRAV23 TRAV23*01 F B3 Abyssinian IMGT000045 MAP 345131..345672
TRAV24 TRAV24 TRAV24*01 F B3 Abyssinian IMGT000045 MAP 359657..360202
TRAV25 TRAV25 TRAV25*01 F B3 Abyssinian IMGT000045 MAP 366980..367604
TRAV26 TRAV26 TRAV26*01 ORF (1) B3 Abyssinian IMGT000045 MAP 413481..414188
TRAV27 TRAV27 TRAV27*01 ORF (1) B3 Abyssinian IMGT000045 MAP 379177..379718
TRAV28 TRAV28 TRAV28*01 ORF (1) B3 Abyssinian IMGT000045 MAP 386708..387303
TRAV29 TRAV29 TRAV29*01 F B3 Abyssinian IMGT000045 MAP 392391..392958
TRAV30 TRAV30 TRAV30*01 P (6) B3 Abyssinian IMGT000045 MAP 398477..398753 (3)
TRAV31 TRAV31 TRAV31*01 P (13) B3 Abyssinian IMGT000045 MAP 401879..402166 (3)
TRAV34 TRAV34 TRAV34*01 ORF (1) B3 Abyssinian IMGT000045 MAP 423860..424494
TRAV35 TRAV35 TRAV35*01 F B3 Abyssinian IMGT000045 MAP 429511..430123
TRAV36 TRAV36 TRAV36*01 ORF (1) B3 Abyssinian IMGT000045 MAP 437799..438359
TRAV37 TRAV37 TRAV37*01 F B3 Abyssinian IMGT000045 MAP 451927..452457
TRAV38 TRAV38-1 TRAV38-1*01 F B3 Abyssinian IMGT000045 MAP 456929..457544
TRAV38-2 TRAV38-2*01 F B3 Abyssinian IMGT000045 MAP 464346..464964
TRAV39 TRAV39 TRAV39*01 P (14) B3 Abyssinian IMGT000045 MAP 481198..481469 (3)
TRAV40 TRAV40 TRAV40*01 F B3 Abyssinian IMGT000045 MAP 494967..495454
TRAV41 TRAV41 TRAV41*01 F B3 Abyssinian IMGT000045 MAP 498168..498734
TRAV43 TRAV43-1 TRAV43-1*01 F B3 Abyssinian IMGT000045 MAP 27798..28356
TRAV43-2 TRAV43-2*01 F B3 Abyssinian IMGT000045 MAP 79713..80272
TRAV43-3 TRAV43-3*01 F B3 Abyssinian IMGT000045 MAP 138857..139415
TRAV43-4 TRAV43-4*01 P (15) B3 Abyssinian IMGT000045 MAP 171624..172181
TRAV43-5 TRAV43-5*01 P (16) B3 Abyssinian IMGT000045 MAP 199351..199910
TRAV43-6 TRAV43-6*01 P (17) B3 Abyssinian IMGT000045 MAP 202792..203354
TRAV46 TRAV46 TRAV46*01 F B3 Abyssinian TRDV6 IMGT000045 MAP 649966..650406

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical V-NONAMER
  2. (2) no L-PART1, no L-PART2, no V-RS and frameshift in V-REGION: several insertions and deletions
  3. (3) position of V-REGION
  4. (4) noncanonical ACCEPTOR-SPLICE natnn instead of nagnn and noncanonical V-NONAMER: gcgtaaact instead of acaaaaacc
  5. (5) frameshift in V-REGION: deletion of 1 nt in CDR2-IMGT
  6. (6) frameshift in L-PART1, frameshift in V-REGION: several insertions and deletions and no V-RS
  7. (7) frameshift in L-PART1, STOP-CODON in V-REGION: position 44 and frameshift in V-REGION: several insertion and deletion
  8. (8) STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 59, frameshift in V-REGION: several deletions in FR3-IMGT and the splicing between the DONOR-SPLICE of L-PART1 and the ACCEPTOR-SPLICE of L-PART2 results into a STOP-CODON
  9. (9) no L-PART1, STOP-CODON in V-REGION: position 95 and frameshift in V-REGION: deletion 5 nt in FR3-IMGT
  10. (10) frameshift in L-PART2, frameshift in V-REGION: several insertions and deletions and no V-RS
  11. (11) frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  12. (12) noncanonical DONOR-SPLICE: ngc instead of ngt
  13. (13) frameshift in V-REGION: deletion of 2 nt in FR3-IMGT and no V-RS
  14. (14) no L-PART1, no V-RS and frameshift in V-REGION: severals insertions and deletions
  15. (15) frameshift in V-REGION: several insertions and deletions
  16. (16) STOP-CODON and frameshift in L-PART1, frameshift in L-PART2, frameshift in V-REGION: several insertions and deletions
  17. (17) frameshift in L-PART1 and frameshift in V-REGION: several insertions and deletions
Created:
29/05/2019
Last updated:
14/06/2019
Authors:
Viviane Nguefack Ngoune
Editors:
Chantal Ginestoux