Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRDJ1 TRDJ1 TRDJ1*01 ORF (1) B3 Abyssinian IMGT000045 MAP 713716..713790
TRDJ2 TRDJ2 TRDJ2*01 ORF (2) B3 Abyssinian IMGT000045 MAP 721331..721411
TRDJ3 TRDJ3 TRDJ3*01 F B3 Abyssinian IMGT000045 MAP 723677..723763
TRDJ4 TRDJ4 TRDJ4*01 F B3 Abyssinian IMGT000045 MAP 719852..719928
TRDJ5 TRDJ5 TRDJ5*01 P (3) B3 Abyssinian IMGT000045 MAP 721629..721721

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-HEPTAMER: tgctctg instead of agctgtg
  2. (2) noncanonical J-HEPTAMER: ggtggtg instead of agctgtg
  3. (3) frameshift in J-REGION
Created:
29/05/2019
Last updated:
13/06/2019
Authors:
Viviane Nguefack Ngoune
Editors:
Chantal Ginestoux