Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
IGKJ1 IGKJ1*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 302850..302926 Boxer CM000017.3 IMGT000002 [1] MAP 134472..134548
IGKJ2 IGKJ2*01 ORF (1) 17 + + Basenji CM016447.1 IMGT000067 MAP 303202..303279 Boxer CM000017.3 IMGT000002 [1] MAP 134824..134901
IGKJ3 IGKJ3*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 303512..303587 Boxer CM000017.3 IMGT000002 [1] MAP 135134..135209
IGKJ4 IGKJ4*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 303843..303919 Boxer CM000017.3 IMGT000002 [1] MAP 135465..135541
IGKJ5 IGKJ5*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 304159..304235 Boxer CM000017.3 IMGT000002 [1] MAP 135781..135857

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-MOTIF: FSXG instead of FGXG
IMGT references:
  1. [1] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018) Sep 19. doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19. PMID: 28924718.. PMID: 28924718
Created:
27/07/2017
Last updated:
16/10/2020
Authors:
Imène Chentli, Perrine Pégorier