Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1*01 P (1) 8 Boxer CM000008.3 IMGT000004 [1] 734935..735026
TRAJ2 TRAJ2*01 F 8 Boxer CM000008.3 IMGT000004 [1] 733761..733840
TRAJ3 TRAJ3*01 F 8 Boxer CM000008.3 IMGT000004 [1] 733218..733303
TRAJ4 TRAJ4*01 F 8 Boxer CM000008.3 IMGT000004 [1] 732243..732333
TRAJ5 TRAJ5*01 F 8 Boxer CM000008.3 IMGT000004 [1] 729402..729489
TRAJ6 TRAJ6*01 F 8 Boxer CM000008.3 IMGT000004 [1] 727996..728085
TRAJ7 TRAJ7*01 ORF (2) 8 Boxer CM000008.3 IMGT000004 [1] 726262..726348
TRAJ8 TRAJ8*01 F 8 Boxer CM000008.3 IMGT000004 [1] 724689..724776
TRAJ9 TRAJ9*01 F 8 Boxer CM000008.3 IMGT000004 [1] 724106..724188
TRAJ10 TRAJ10*01 ORF (3) 8 Boxer CM000008.3 IMGT000004 [1] 722193..722283
TRAJ11 TRAJ11*01 ORF (4) 8 Boxer CM000008.3 IMGT000004 [1] 721186..721273
TRAJ12 TRAJ12*01 F 8 Boxer CM000008.3 IMGT000004 [1] 720608..720695
TRAJ13 TRAJ13*01 F 8 Boxer CM000008.3 IMGT000004 [1] 719767..719855
TRAJ14 TRAJ14*01 P (5) 8 Boxer CM000008.3 IMGT000004 [1] 718566..718651
TRAJ15 TRAJ15*01 F 8 Boxer CM000008.3 IMGT000004 [1] 717818..717905
TRAJ16 TRAJ16*01 F 8 Boxer CM000008.3 IMGT000004 [1] 716669..716756
TRAJ17 TRAJ17*01 P (1) 8 Boxer CM000008.3 IMGT000004 [1] 715280..715366
TRAJ18 TRAJ18*01 F 8 Boxer CM000008.3 IMGT000004 [1] 714143..714236
TRAJ19 TRAJ19*01 ORF (6) 8 Boxer CM000008.3 IMGT000004 [1] 713752..713835
TRAJ20 TRAJ20*01 F 8 Boxer CM000008.3 IMGT000004 [1] 712772..712856
TRAJ21 TRAJ21*01 F 8 Boxer CM000008.3 IMGT000004 [1] 712041..712123
TRAJ22 TRAJ22*01 ORF (7) 8 Boxer CM000008.3 IMGT000004 [1] 710283..710368
TRAJ23 TRAJ23*01 F 8 Boxer CM000008.3 IMGT000004 [1] 708653..708743
TRAJ24 TRAJ24*01 ORF (8) 8 Boxer CM000008.3 IMGT000004 [1] 708218..708309
TRAJ25 TRAJ25*01 F 8 Boxer CM000008.3 IMGT000004 [1] 707357..707444
TRAJ26 TRAJ26*01 F 8 Boxer CM000008.3 IMGT000004 [1] 707019..707106
TRAJ27 TRAJ27*01 F 8 Boxer CM000008.3 IMGT000004 [1] 704856..704942
TRAJ28 TRAJ28*01 F 8 Boxer CM000008.3 IMGT000004 [1] 704213..704303
TRAJ29 TRAJ29*01 P (9) 8 Boxer CM000008.3 IMGT000004 [1] 703168..703284
TRAJ30 TRAJ30*01 F 8 Boxer CM000008.3 IMGT000004 [1] 702128..702214
TRAJ31 TRAJ31*01 F 8 Boxer CM000008.3 IMGT000004 [1] 700112..700196
TRAJ32 TRAJ32*01 F 8 Boxer CM000008.3 IMGT000004 [1] 698585..698676
TRAJ33 TRAJ33*01 F 8 Boxer CM000008.3 IMGT000004 [1] 697830..697914
TRAJ34 TRAJ34*01 F 8 Boxer CM000008.3 IMGT000004 [1] 697135..697220
TRAJ35 TRAJ35*01 ORF (10) 8 Boxer CM000008.3 IMGT000004 [1] 696204..696297
TRAJ36 TRAJ36*01 P (1) 8 Boxer CM000008.3 IMGT000004 [1] 694680..694784
TRAJ37 TRAJ37*01 F 8 Boxer CM000008.3 IMGT000004 [1] 693908..693997
TRAJ38 TRAJ38*01 F 8 Boxer CM000008.3 IMGT000004 [1] 692391..692480
TRAJ39 TRAJ39*01 F 8 Boxer CM000008.3 IMGT000004 [1] 691745..691835
TRAJ40 TRAJ40*01 F 8 Boxer CM000008.3 IMGT000004 [1] 689632..689720
TRAJ41 TRAJ41*01 F 8 Boxer CM000008.3 IMGT000004 [1] 687591..687680
TRAJ42 TRAJ42*01 F 8 Boxer CM000008.3 IMGT000004 [1] 687081..687174
TRAJ43 TRAJ43*01 F 8 Boxer CM000008.3 IMGT000004 [1] 686253..686337
TRAJ44 TRAJ44*01 F 8 Boxer CM000008.3 IMGT000004 [1] 685158..685248
TRAJ45 TRAJ45*01 F 8 Boxer CM000008.3 IMGT000004 [1] 684046..684136
TRAJ46 TRAJ46*01 ORF (11) 8 Boxer CM000008.3 IMGT000004 [1] 683533..683623
TRAJ47 TRAJ47*01 P (1) 8 Boxer CM000008.3 IMGT000004 [1] 682945..683042
TRAJ48 TRAJ48*01 F 8 Boxer CM000008.3 IMGT000004 [1] 680957..681047
TRAJ49 TRAJ49*01 F 8 Boxer CM000008.3 IMGT000004 [1] 680151..680237
TRAJ50 TRAJ50*01 F 8 Boxer CM000008.3 IMGT000004 [1] 679313..679400
TRAJ52 TRAJ52*01 ORF (12) 8 Boxer CM000008.3 IMGT000004 [1] 676925..677021
TRAJ53 TRAJ53*01 ORF (13) 8 Boxer CM000008.3 IMGT000004 [1] 673958..674044
TRAJ54 TRAJ54*01 F 8 Boxer CM000008.3 IMGT000004 [1] 673310..673402
TRAJ56 TRAJ56*01 F 8 Boxer CM000008.3 IMGT000004 [1] 670536..670625
TRAJ57 TRAJ57*01 ORF (14) 8 Boxer CM000008.3 IMGT000004 [1] 669889..669979
TRAJ58 TRAJ58*01 F 8 Boxer CM000008.3 IMGT000004 [1] 668669..668759
TRAJ59 TRAJ59*01 ORF (15) 8 Boxer CM000008.3 IMGT000004 [1] 667521..667608
TRAJ60 TRAJ60*01 F 8 Boxer CM000008.3 IMGT000004 [1] 667278..667361
TRAJ61 TRAJ61*01 P (1) 8 Boxer CM000008.3 IMGT000004 [1] 666264..666361
IMGT notes:
  1. (1) Frameshift in J-REGION
  2. (2) Noncanonical J-HEPTAMER: cagagcg instead of cacagtg
  3. (3) Noncanonical J-HEPTAMER: cactatg instead of cactgtg
  4. (4) Noncanonical J-HEPTAMER: tctggtg instead of tgtggtg
  5. (5) In frame STOP-CODON in J-REGION
  6. (6) Noncanonical J-HEPTAMER: tctagtc instead of tatagtg, unexpected J-SPACER length (10 nt instead of 12 nt)
  7. (7) Non conserved consensus sequence, FGXG is replaced by FGXR, unexpected V-SPACER length (9 nt instead of 12 nt)
  8. (8) Non conserved consensus sequence, FGXG is replaced by SGXG, noncanonical DONOR-SPLICE: nga instead of ngt
  9. (9) Frameshift in J-REGION, non conserved consensus sequence, FGXG is replaced by FCXG
  10. (10) Non conserved consensus sequence, FGXG is replaced by FWXL
  11. (11) Non conserved consensus sequence, FGXG is replaced by FGXR, noncanonical J-HEPTAMER: aacggtg instead of catggtg
  12. (12) Noncanonical J-HEPTAMER: tgcggtg instead of tgtggtg
  13. (13) Noncanonical J-HEPTAMER: tgtagtg instead of tgcagtg
  14. (14) Non conserved consensus sequence, FGXG is replaced by FGXE
  15. (15) Non conserved consensus sequence, FGXG is replaced by SGXR
IMGT references:
  1. [1] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018) Sep 19. doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19. PMID: 28924718
Created:
07/06/2017
Last updated:
14/10/2020
Authors:
Saida Hadi-Saljoqi