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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRGJ1 TRGJ1*01 F + + JH473572 [1] 28053..28140 IMGT000015 30663..30750
TRGJ2 TRGJ2*01 F (1) + + JH473572 [1] 31001..31088 IMGT000015 33611..33698
TRGJ3 TRGJ3*01 F + + JH473572 [1] 34649..34726
TRGJ3*02 F + + IMGT000015 37258..37335
IMGT notes:
  1. (1) noncanonical J-NONAMER: gctttctac instead of agtttttga and noncanonical J-HEPTAMER: gatagtg instead of cacagtg, however this J-GENE has been found rearranged
IMGT references:
  1. [1] Linguiti, G. et al., BMC Genomics, 17, 634 (2016). PMID: 27528257
Created:
24/07/2018
Last updated:
26/07/2018
Authors:
Perrine Pégorier
Editor:
Chantal Ginestoux