Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1*01 ORF (1) 17 Thorbecke inbred IMGT000031 MAP 886166..886253
TRAJ2 TRAJ2*01 F 17 Thorbecke inbred IMGT000031 MAP 884867..884960
TRAJ3 TRAJ3*01 F 17 Thorbecke inbred IMGT000031 MAP 883185..883275
TRAJ4 TRAJ4*01 F 17 Thorbecke inbred IMGT000031 MAP 882226..882317
TRAJ5 TRAJ5*01 ORF (2) 17 Thorbecke inbred IMGT000031 MAP 879969..880055
TRAJ6 TRAJ6*01 F 17 Thorbecke inbred IMGT000031 MAP 878496..878583
TRAJ7 TRAJ7*01 F 17 Thorbecke inbred IMGT000031 MAP 877090..877176
TRAJ8 TRAJ8*01 F 17 Thorbecke inbred IMGT000031 MAP 874742..874829
TRAJ9 TRAJ9*01 F 17 Thorbecke inbred IMGT000031 MAP 873776..873865
TRAJ10 TRAJ10*01 ORF (2) 17 + + Thorbecke inbred IMGT000031 MAP 871913..872004
TRAJ11 TRAJ11*01 F 17 Thorbecke inbred IMGT000031 MAP 870865..870952
TRAJ12 TRAJ12*01 F 17 Thorbecke inbred IMGT000031 MAP 870294..870374
TRAJ13 TRAJ13*01 F 17 Thorbecke inbred IMGT000031 MAP 869449..869539
TRAJ14 TRAJ14*01 ORF (3) 17 Thorbecke inbred IMGT000031 MAP 868704..868783
TRAJ15 TRAJ15*01 F 17 Thorbecke inbred IMGT000031 MAP 868017..868104
TRAJ16 TRAJ16*01 F 17 Thorbecke inbred IMGT000031 MAP 866967..867055
TRAJ17 TRAJ17*01 F 17 Thorbecke inbred IMGT000031 MAP 865602..865690
TRAJ18 TRAJ18*01 F 17 Thorbecke inbred IMGT000031 MAP 864435..864528
TRAJ19 TRAJ19*01 ORF (4) 17 Thorbecke inbred IMGT000031 MAP 864059..864143
TRAJ20 TRAJ20*01 F 17 Thorbecke inbred IMGT000031 MAP 862678..862762
TRAJ21 TRAJ21*01 F 17 Thorbecke inbred IMGT000031 MAP 861851..861933
TRAJ22 TRAJ22*01 F 17 Thorbecke inbred IMGT000031 MAP 860341..860431
TRAJ23 TRAJ23*01 F 17 Thorbecke inbred IMGT000031 MAP 858789..858879
TRAJ24 TRAJ24*01 F 17 Thorbecke inbred IMGT000031 MAP 858370..858460
TRAJ25 TRAJ25*01 F 17 Thorbecke inbred IMGT000031 MAP 857575..857661
TRAJ26 TRAJ26*01 F 17 Thorbecke inbred IMGT000031 MAP 857204..857289
TRAJ27 TRAJ27*01 F 17 Thorbecke inbred IMGT000031 MAP 855164..855250
TRAJ28 TRAJ28*01 F 17 Thorbecke inbred IMGT000031 MAP 854501..854592
TRAJ29 TRAJ29*01 F 17 Thorbecke inbred IMGT000031 MAP 853548..853635
TRAJ30 TRAJ30*01 ORF (5) 17 Thorbecke inbred IMGT000031 MAP 852472..852558
TRAJ31 TRAJ31*01 F 17 Thorbecke inbred IMGT000031 MAP 850247..850331
TRAJ32 TRAJ32*01 F 17 Thorbecke inbred IMGT000031 MAP 848629..848722
TRAJ33 TRAJ33*01 F 17 Thorbecke inbred IMGT000031 MAP 847932..848016
TRAJ34 TRAJ34*01 F 17 Thorbecke inbred IMGT000031 MAP 847273..847358
TRAJ35 TRAJ35*01 F 17 Thorbecke inbred IMGT000031 MAP 846227..846317
TRAJ36 TRAJ36*01 F 17 Thorbecke inbred IMGT000031 MAP 844696..844784
TRAJ37 TRAJ37*01 F 17 Thorbecke inbred IMGT000031 MAP 843964..844053
TRAJ38 TRAJ38*01 F 17 Thorbecke inbred IMGT000031 MAP 842435..842524
TRAJ39 TRAJ39*01 F 17 Thorbecke inbred IMGT000031 MAP 841837..841927
TRAJ40 TRAJ40*01 F 17 Thorbecke inbred IMGT000031 MAP 839937..840025
TRAJ41 TRAJ41*01 F 17 Thorbecke inbred IMGT000031 MAP 838230..838316
TRAJ42 TRAJ42*01 F 17 Thorbecke inbred IMGT000031 MAP 837709..837802
TRAJ43 TRAJ43*01 F 17 Thorbecke inbred IMGT000031 MAP 836865..836949
TRAJ44 TRAJ44*01 F (6) 17 Thorbecke inbred IMGT000031 MAP 835783..835871
TRAJ45 TRAJ45*01 F 17 Thorbecke inbred IMGT000031 MAP 834898..834991
TRAJ46 TRAJ46*01 P (7) 17 Thorbecke inbred IMGT000031 MAP 834421..834482 (10)
TRAJ47 TRAJ47*01 F 17 Thorbecke inbred IMGT000031 MAP 833841..833925
TRAJ48 TRAJ48*01 F 17 Thorbecke inbred IMGT000031 MAP 831982..832072
TRAJ49 TRAJ49*01 F 17 Thorbecke inbred IMGT000031 MAP 831187..831273
TRAJ50 TRAJ50*01 F 17 Thorbecke inbred IMGT000031 MAP 830328..830412
TRAJ51 TRAJ51*01 ORF (8) 17 Thorbecke inbred IMGT000031 MAP 828964..829054
TRAJ52 TRAJ52*01 F 17 Thorbecke inbred IMGT000031 MAP 828012..828108
TRAJ53 TRAJ53*01 F 17 Thorbecke inbred IMGT000031 MAP 824882..824972
TRAJ54 TRAJ54*01 F 17 Thorbecke inbred IMGT000031 MAP 823849..823941
TRAJ56 TRAJ56*01 F 17 Thorbecke inbred IMGT000031 MAP 821132..821221
TRAJ57 TRAJ57*01 F 17 Thorbecke inbred IMGT000031 MAP 820527..820617
TRAJ58 TRAJ58*01 F 17 Thorbecke inbred IMGT000031 MAP 819401..819491
TRAJ61 TRAJ61*01 ORF (9) 17 Thorbecke inbred IMGT000031 MAP 817020..817107

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-MOTIF: FGXC instead of FGXG
  2. (2) noncanonical J-MOTIF: LGXG instead of FGXG
  3. (3) noncanonical J-MOTIF: LEXG instead of FGXG
  4. (4) noncanonical J-NONAMER: gtgatttgg instead of ggtttttgt, noncanonical J-HEPTAMER: cctggcc instead of cacagtg
  5. (5) noncanonical J-HEPTAMER: aaaagtg instead of cacagtg
  6. (6) STOP-CODON at position 1 (first 5' codon of germline J-REGION) may disappear during rearrangements
  7. (7) no J-RS, frameshift in J-REGION: deletion of 1 nt
  8. (8) noncanonical J-MOTIF: FGXR instead of FGXG, noncanonical DONOR-SPLICE: ngc instead of ngt
  9. (9) noncanonical J-MOTIF: FGXK instead of FGXG, noncanonical DONOR-SPLICE: ngc instead of ngt
  10. (10) Positions of J-REGION
Created:
20/11/2018
Last updated:
17/12/2018
Authors:
Perrine Pégorier
Editor:
Chantal Ginestoux