Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRBJ1-1 TRBJ1-1*01 F Thorbecke inbred IMGT000032 [1] 503695..503770
TRBJ1-2 TRBJ1-2*01 F + + Thorbecke inbred IMGT000032 [1] 503830..503905
TRBJ1-3 TRBJ1-3*01 F Thorbecke inbred IMGT000032 [1] 504356..504433
TRBJ1-4 TRBJ1-4*01 F Thorbecke inbred IMGT000032 [1] 504900..504978
TRBJ1-5 TRBJ1-5*01 ORF (1) Thorbecke inbred IMGT000032 [1] 505171..505241
TRBJ1-6 TRBJ1-6*01 F Thorbecke inbred IMGT000032 [1] 505663..505710
TRBJ2-1 TRBJ2-1*01 F S60737 [2] (2) 1361..1441 M61124 [2] 1361..1441
TRBJ2-2 TRBJ2-2*01 F S60737 [2] (2) 1576..1654 M61124 [2] 1576..1654
TRBJ2-3 TRBJ2-3*01 F S60737 [2] (2) 1829..1905 M61124 [2] 1829..1905
TRBJ2-4 TRBJ2-4*01 F S60737 [2] (2) 1966..2042 M61124 [2] 1966..2042
TRBJ2-5 TRBJ2-5*01 F S60737 [2] (2) 2112..2304 M26603 [3,4] 123..202
M61124 [2] 2179..2258
TRBJ2-6 TRBJ2-6*01 F S60737 [2] (2) 2349..2423 M26603 [3,4] 293..367
M61124 [2] 2349..2423
TRBJ2-6*02 F + + Thorbecke inbred IMGT000032 [1] 513223..513269 (3)
IMGT notes:
  1. (1) noncanonical J-NONAMER: agggtttgc instead of ggtttttgt, noncanonical J-HEPTAMER: aactgtg instead of ggctgtg
  2. (2) Sequence not in locus reference sequence (assembly Orycun2.0)
  3. (3) Positions of J-REGION
IMGT references:
  1. [1] Antonacci R., et al. Immunogenetics 66:255-266 (2014). PMID: 24500788
  2. [2] Harindranath N., et al. Mol. Immunol. 28(8):881-888 (1991). PMID: 1678859
  3. [3] Komatsu M., et al. J. Immunol. 138(5):1621-1626 (1987). PMID: 2879869
  4. [4] Harindranath N., et al. J. Immunogenetics 30(6):465-474 (1989). PMID: 2592023
Created:
15/01/2019
Last updated:
21/01/2019
Authors:
Perrine Pégorier
Editor:
Chantal Ginestoux