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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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TRAJ44D in OviAri_1_chr7 is not present in IMGT000048 and may result from an assembly error. TRAJ29D, TRAJ29N, TRAJ30D, TRAJ31D, TRAJ31N, TRAJ32D, TRAJ32N, TRAJ33D, TRAJ33N, TRAJ34D, TRAJ34N, TRAJ35D, TRAJ35N, TRAJ36D, TRAJ36N, TRAJ37D, TRAJ37N, TRAJ38D and TRAJ39D in IMGT000048 are not present in OviAri_1_chr7 and may result from an assembly error.

IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2863135..2863224 Texel OviAri_1_chr7 [1] MAP complement(123742..123831)
TRAJ2 TRAJ2*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2862163..2862256 Texel OviAri_1_chr7 [1] MAP complement(124710..124803)
TRAJ3 TRAJ3*01 ORF (1) 7 Rambouillet CM008478.1 IMGT000048 MAP 2861622..2861708
TRAJ3*02 ORF (1) 7 Texel TRAJ3*01 OviAri_1_chr7 [1] (10) MAP complement(125258..125344)
TRAJ4 TRAJ4*01 ORF (1) 7 Rambouillet CM008478.1 IMGT000048 MAP 2860652..2860742 Texel OviAri_1_chr7 [1] MAP complement(126224..126314)
TRAJ5 TRAJ5*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2857634..2857720
TRAJ5*02 F 7 Texel TRAJ5*01 OviAri_1_chr7 [1] (10) MAP complement(129246..129332)
TRAJ6 TRAJ6*01 ORF (2) 7 Rambouillet CM008478.1 IMGT000048 MAP 2856439..2856528 Texel OviAri_1_chr7 [1] MAP complement(130420..130509)
TRAJ7 TRAJ7*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2855802..2855885 Texel OviAri_1_chr7 [1] MAP complement(131063..131146)
TRAJ8-1 TRAJ8-1*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2854246..2854333 Texel TRAJ8*01 OviAri_1_chr7 [1] MAP complement(132609..132696)
TRAJ8-2 TRAJ8-2*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2851402..2851489 Texel TRAJ10*01 OviAri_1_chr7 [1] MAP complement(135451..135538)
TRAJ9 TRAJ9*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2853660..2853748
TRAJ9*02 F 7 + + Texel TRAJ9*01 OviAri_1_chr7 [1] (10) MAP complement(133194..133282)
TRAJ10 TRAJ10*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2850931..2851021
TRAJ10*02 F 7 Texel TRAJ11*01 OviAri_1_chr7 [1] (10) MAP complement(135919..136009)
TRAJ11 TRAJ11*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2849929..2850016 Texel TRAJ12*01 OviAri_1_chr7 [1] MAP complement(136923..137011)
TRAJ12 TRAJ12*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2849367..2849454 Texel TRAJ13*01 OviAri_1_chr7 [1] (3) MAP complement(137486..137573)
TRAJ13 TRAJ13*01 ORF (4) 7 Rambouillet CM008478.1 IMGT000048 MAP 2848520..2848597 Texel TRAJ14*01 OviAri_1_chr7 [1] MAP complement(138336..138413)
TRAJ14 TRAJ14*01 ORF (5) 7 Rambouillet CM008478.1 IMGT000048 MAP 2847818..2847897 Texel TRAJ15*01 OviAri_1_chr7 [1] MAP complement(139036..139115)
TRAJ15 TRAJ15*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2846927..2847014 Texel TRAJ16*01 OviAri_1_chr7 [1] MAP complement(139919..140006)
TRAJ16 TRAJ16*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2845839..2845927 Texel TRAJ17*01 OviAri_1_chr7 [1] MAP complement(141006..141094)
TRAJ17 TRAJ17*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2844430..2844520 Texel TRAJ18*01 OviAri_1_chr7 [1] MAP complement(142413..142503)
TRAJ18 TRAJ18*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2843316..2843409 Texel TRAJ19*01 OviAri_1_chr7 [1] MAP complement(143524..143617)
TRAJ19 TRAJ19*01 P (6) 7 Rambouillet CM008478.1 IMGT000048 MAP 2842960..2843017 (11) Texel TRAJ20*01 OviAri_1_chr7 [1] MAP complement(143916..143973) (11)
TRAJ20 TRAJ20*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2841974..2842059 Texel OviAri_1_chr7 [1] MAP complement(144873..144958)
TRAJ21 TRAJ21*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2841279..2841361 Texel OviAri_1_chr7 [1] MAP complement(145569..145651)
TRAJ22 TRAJ22*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2839744..2839834 Texel OviAri_1_chr7 [1] MAP complement(147096..147186)
TRAJ23 TRAJ23*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2838628..2838718 Texel OviAri_1_chr7 [1] MAP complement(148212..148302)
TRAJ24 TRAJ24*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2838184..2838274 Texel OviAri_1_chr7 [1] MAP complement(148656..148746)
TRAJ25 TRAJ25*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2837336..2837423 Texel OviAri_1_chr7 [1] MAP complement(149507..149594)
TRAJ26 TRAJ26*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2837039..2837126 Texel OviAri_1_chr7 [1] MAP complement(149804..149891)
TRAJ27 TRAJ27*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2834849..2834935 Texel OviAri_1_chr7 [1] MAP complement(152009..152095)
TRAJ28 TRAJ28*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2834192..2834285 Texel OviAri_1_chr7 [1] MAP complement(152659..152752)
TRAJ29 TRAJ29*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2833171..2833258 Texel OviAri_1_chr7 [1] MAP complement(153686..153773)
TRAJ29D TRAJ29D*01 ORF (4) 7 Rambouillet CM008478.1 IMGT000048 MAP 2812027..2812113
TRAJ29N TRAJ29N*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2811825..2811912
TRAJ30 TRAJ30*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2832160..2832246 Texel OviAri_1_chr7 [1] MAP complement(154698..154784)
TRAJ30D TRAJ30D*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2810834..2810910
TRAJ31 TRAJ31*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2830065..2830150 Texel OviAri_1_chr7 [1] MAP complement(156794..156879)
TRAJ31D TRAJ31D*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2819370..2819456
TRAJ31N TRAJ31N*01 P (8) 7 Rambouillet CM008478.1 IMGT000048 MAP 2808773..2808857
TRAJ32 TRAJ32*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2806955..2807048
TRAJ32*02 F 7 Texel TRAJ32*01 OviAri_1_chr7 [1] (10) MAP complement(158599..158692)
TRAJ32D TRAJ32D*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2828239..2828332
TRAJ32N TRAJ32N*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2817576..2817667
TRAJ33 TRAJ33*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2806218..2806303 Texel OviAri_1_chr7 [1] MAP complement(159345..159429)
TRAJ33D TRAJ33D*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2827502..2827586
TRAJ33N TRAJ33N*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2816850..2816932
TRAJ34 TRAJ34*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2805528..2805612 Texel OviAri_1_chr7 [1] MAP complement(160035..160119)
TRAJ34D TRAJ34D*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2826812..2826896
TRAJ34N TRAJ34N*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2816160..2816242
TRAJ35 TRAJ35*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2804490..2804573
TRAJ35*02 F 7 Texel TRAJ35*01 OviAri_1_chr7 [1] (10) MAP complement(161074..161157)
TRAJ35D TRAJ35D*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2825775..2825858
TRAJ35N TRAJ35N*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2815121..2815204
TRAJ36 TRAJ36*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2803000..2803088 Texel OviAri_1_chr7 [1] MAP complement(162561..162649)
TRAJ36D TRAJ36D*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2824284..2824372
TRAJ36N TRAJ36N*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2813643..2813730
TRAJ37 TRAJ37*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2802303..2802392
TRAJ37*02 F 7 + + Texel TRAJ37*01 OviAri_1_chr7 [1] (10) MAP complement(163258..163347)
TRAJ37D TRAJ37D*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2823586..2823675
TRAJ37N TRAJ37N*01 P (7) 7 Rambouillet CM008478.1 IMGT000048 MAP 2812950..2813038
TRAJ38 TRAJ38*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2800817..2800906 Texel OviAri_1_chr7 [1] MAP complement(164744..164833)
TRAJ38D TRAJ38D*01 P (8) 7 Rambouillet CM008478.1 IMGT000048 MAP 2822099..2822187
TRAJ39 TRAJ39*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2800178..2800268 Texel OviAri_1_chr7 [1] MAP complement(165382..165472)
TRAJ39D TRAJ39D*01 P (8) 7 Rambouillet CM008478.1 IMGT000048 MAP 2821462..2821551
TRAJ40 TRAJ40*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2798224..2798308 Texel OviAri_1_chr7 [1] MAP complement(167339..167423)
TRAJ41 TRAJ41*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2796508..2796596 Texel OviAri_1_chr7 [1] MAP complement(169051..169139)
TRAJ42 TRAJ42*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2796038..2796131 Texel OviAri_1_chr7 [1] MAP complement(169516..169609)
TRAJ43 TRAJ43*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2795260..2795344 Texel OviAri_1_chr7 [1] MAP complement(170304..170388)
TRAJ44 TRAJ44*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2793957..2794046 Texel OviAri_1_chr7 [1] MAP complement(171602..171691)
TRAJ44D TRAJ44D*01 F 7 Texel TRAJ45*01 OviAri_1_chr7 [1] (10) MAP complement(171887..171976)
TRAJ45 TRAJ45*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2793110..2793200 Texel TRAJ46*01 OviAri_1_chr7 [1] MAP complement(172733..172823)
TRAJ46 TRAJ46*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2792596..2792686 Texel TRAJ47*01 OviAri_1_chr7 [1] MAP complement(173247..173337)
TRAJ47 TRAJ47*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2791857..2791941 Texel TRAJ48*01 OviAri_1_chr7 [1] MAP complement(173991..174075)
TRAJ48 TRAJ48*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2789823..2789913 Texel TRAJ49*01 OviAri_1_chr7 [1] MAP complement(176020..176110)
TRAJ49 TRAJ49*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2788941..2789024 Texel TRAJ50*01 OviAri_1_chr7 [1] MAP complement(176908..176991)
TRAJ50 TRAJ50*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2788070..2788153 Texel TRAJ51*01 OviAri_1_chr7 [1] MAP complement(177779..177862)
TRAJ52 TRAJ52*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2785697..2785790 Texel TRAJ53*01 OviAri_1_chr7 [1] MAP complement(180143..180236)
TRAJ53 TRAJ53*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2782491..2782584 Texel TRAJ54*01 OviAri_1_chr7 [1] MAP complement(183350..183443)
TRAJ54 TRAJ54*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2781827..2781916 Texel TRAJ55*01 OviAri_1_chr7 [1] MAP complement(184019..184108)
TRAJ56 TRAJ56*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2779078..2779167 Texel OviAri_1_chr7 [1] MAP complement(186768..186857)
TRAJ57 TRAJ57*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2778436..2778526 Texel OviAri_1_chr7 [1] MAP complement(187409..187499)
TRAJ58 TRAJ58*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2777213..2777303 Texel OviAri_1_chr7 [1] MAP complement(188633..188723)
TRAJ59 TRAJ59*01 F 7 Rambouillet CM008478.1 IMGT000048 MAP 2776072..2776152 Texel OviAri_1_chr7 [1] MAP complement(189783..189863)
TRAJ60 TRAJ60*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2775823..2775907 Texel OviAri_1_chr7 [1] MAP complement(190028..190112)
TRAJ61 TRAJ61*01 P (9) 7 Rambouillet CM008478.1 IMGT000048 MAP 2774853..2774940 Texel OviAri_1_chr7 [1] MAP complement(190995..191083)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-HEPTAMER
  2. (2) noncanonical J-MOTIF
  3. (3) functionality different from the reference sequence: ORF because noncanonical J-NONAMER
  4. (4) noncanonical J-NONAMER, noncanonical J-HEPTAMER
  5. (5) noncanonical J-NONAMER, noncanonical J-MOTIF
  6. (6) no J-NONAMER
  7. (7) frameshifts in J-REGION
  8. (8) frameshift in J-REGION
  9. (9) STOP-CODON in J-REGION
  10. (10) Sequence not in locus reference sequence (assembly Oar_rambouillet_v1.0)
  11. (11) Positions of J-REGION
IMGT references:
  1. [1] Piccinni B. et al., BMC Genomics, 16:709 (2015). PMID: 26383271
Created:
15/06/2016
Last updated:
14/10/2020
Authors:
Imène Chentli, Perrine Pégorier