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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
TRDD TRDD1 TRDD1*01 ORF (1) 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2652416..2652491
TRDD1*02 ORF (1) 7 + + Texel OviAri_1_chr7 [1] (3) MAP complement(303034..303109)
TRDD2 TRDD2*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2664598..2664676 Texel TRDD1*01 OviAri_1_chr7 [1] MAP complement(290954..291032)
TRDD3 TRDD3*01 ORF (1) 7 Rambouillet CM008478.1 IMGT000048 MAP 2670682..2670757 Texel OviAri_1_chr7 [1] MAP complement(284874..284949)
TRDD4 TRDD4*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2680423..2680504 Texel TRDD2*01 OviAri_1_chr7 [1] MAP complement(275085..275166)
TRDD5 TRDD5*01 ORF (2) 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2689362..2689439 Texel TRDD3*01 OviAri_1_chr7 [1] MAP complement(266234..266311)
TRDD6 TRDD6*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2700456..2700535 Texel TRDD4*01 OviAri_1_chr7 [1] MAP complement(255128..255207)
TRDD7 TRDD7*01 ORF (2) 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2725129..2725208 Texel TRDD5*01 OviAri_1_chr7 [1] MAP complement(240881..240960)
TRDD8 TRDD8*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2731315..2731390 Texel TRDD6*01 OviAri_1_chr7 [1] MAP complement(234692..234767)
TRDD9 TRDD9*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2745931..2746008 Texel TRDD7*01 OviAri_1_chr7 [1] MAP complement(219955..220032)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical 3'D-NONAMER
  2. (2) noncanonical 3'D-HEPTAMER
  3. (3) Sequence not in locus reference sequence (assembly Oar_rambouillet_v1.0)
IMGT references:
  1. [1] Piccinni B. et al., BMC Genomics, 16:709 (2015). PMID: 26383271
Created:
21/06/2016
Last updated:
14/10/2020
Authors:
Imène Chentli, Perrine Pégorier