Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRDJ1 TRDJ1*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2746919..2746999 Texel TRDJ1-1*01 OviAri_1_chr7 [1] MAP complement(218962..219042)
Altamurana AJ277510 [2] 44..124
TRDJ2 TRDJ2*01 ORF (1) 7 Rambouillet CM008478.1 IMGT000048 MAP 2754145..2754227 Texel TRDJ1-3*01 OviAri_1_chr7 [1] MAP complement(211699..211781)
TRDJ3 TRDJ3*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2756521..2756607 Texel TRDJ1-4*01 OviAri_1_chr7 [1] MAP complement(209319..209405)
Altamurana AJ277511 [2] 56..142
TRDJ4 TRDJ4*01 F 7 + + Rambouillet CM008478.1 IMGT000048 MAP 2752696..2752772 Texel TRDJ1-2*01 OviAri_1_chr7 [1] MAP complement(213154..213230)
Altamurana AJ277512 [2] 71..147

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-HEPTAMER, noncanonical J-MOTIF
IMGT references:
  1. [1] Piccinni B. et al., BMC Genomics, 16:709 (2015). PMID: 26383271
  2. [2] Massari S.et al., Immunogenetics 52(1-2):1-8 (2000). PMID: 11132143
Created:
15/06/2016
Last updated:
14/10/2020
Authors:
Imène Chentli, Perrine Pégorier