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House mouse (Mus musculus) TRG locus on chromosome 13 (13A2)

The orientation of the house mouse (Mus musculus) TRG locus on the chromosome 13 (13A2) is forward (FWD).

Locus representation mouse TRG

Legend:
Colors are according to IMGT color menu for genes.
The boxes representing the genes are not to scale. Exons are not shown.
A double slash // indicates a gap in genome assembly. Distances in bp (base pair) or in kb (kilobase) associated with a double slash are taken into account in the length of the lines and included in the numbers displayed at the right end of the lines.
A dotted line ... indicates the distance in kb (kilobase) between the locus and its bornes (5' borne and the most 5' gene in the locus and/or 3' borne and the most 3' gene in the locus) on the top and bottom lines, respectively. These distances are not represented at scale and are not included in the numbers displayed at the right ends of these two lines.

Horizontal arrows show genes whose polarity is opposite to that of the locus.

Bornes of the house mouse (Mus musculus) TRG locus

• AMPH (amphiphysin) (5' borne) has been identified 24 kb upstream of TRGV7 (F), the most 5' gene in the locus.
• STARD3NL (STARD3 N-terminal like) (3' borne) has been identified 5,3 kb downstream of TRGC4 (F), the most 3' gene in the locus.

Locus representation with only the functional genes: House mouse (Mus musculus) TRG

Locus representation mouse TRG

* When needed, indicate the presence of allele(s) with another functionality: see above House mouse (Mus musculus) TRG locus

IMGT references:
TRG genes
  1. [1] Hayday et al., Cell, 40, 259-269 (1985).
  2. [2] Garman et al., Cell, 45, 733-742 (1986).
  3. [3] Traunecker et al., EMBO J., 5, 1589-1593 (1986).
  4. [4] Pelkonen et al., EMBO J., 6, 1941-1944 (1987).
  5. [5] Vernooij et al., Genomics, 17, 566-574 (1993).
Enhancers
  1. [6] Spencer, D.M. et al., Proc. Natl. Acad. Sci USA, 88, 800-804 (1991).
  2. [7] Kappes, D.J. et al., Proc. Natl. Acad. Sci. USA, 88, 2204-2208 (1991).
TRG locus
  1. [8] Folch, G., Scaviner, D., Ginestoux, C., Giudicelli, V. and Lefranc, M.-P. IMGT overview: the mouse T cell receptor gamma TRG genes. 19th International Mouse Genome Conference (IMGC), November 5-8, 2005, Strasbourg, France (2005). .
Created:
28/05/1997
Last updated:
15/10/2015
Authors:
Marie-Paule Lefranc
Editors:
Chantal Ginestoux