Other MHC entries

IMGT MHC entry from gene to protein for Mus musculus MH2-EA

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

MH2-EA Gene exon/intron organization
Legend:

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
MH2-EA*01 K00971 Sw: P01904 255aa
MH2-EA*04 BC106107 Tr: Q3KQP6 255aa
MH2-EA*06 V00833, V00834 Sw: P04224 255aa
MH2-EA*07 U13648 Tr: Q31092 255aa
MH2-EA*08 NM_010381 NP_034511 255aa
IMGT notes:
  1. (1) No EX1 and partial EX4.
  2. (2) Sequence has been extracted from the genome annotation reference sequence NT_039649. Partial no EX1.
IMGT references:
  1. [1] Hyldig-Nielsen, J.J. et al, Nucleic Acids Res. 11, 5055-5071 (1983). PMID: 6308570
  2. [2] Cao, T.M. et al, Proc. Natl. Acad. Sci. U.S.A. 100, 11571-11576 (2003). PMID: 14504392
  3. [3] Mathis, D.J. et al, Cell 32, 745-754 (1983). PMID: 6403249
  4. [4] Tacchini-Cottier, F. et al, Int. Immunol. 7, 1459-1471 (1995).. PMID: 7495754

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

MH2-EA*02: K00971(g)

Nucleotide sequence

1        atggccacaa ttggagccct gctgttaaga tttttcttca ttgctgttct gatgagctcc

61       cagaagtcat gggctatcaa agaggaacac accatcatcc aggcggagtt ctatctttta

121      ccagacaaac gtggagagtt tatgtttgac tttgacggcg atgagatttt ccatgtagac

181      attgaaaagt cagagaccat ctggagactt gaagaatttg caaagtttgc cagctttgag

241      gctcagggtg cactggctaa tatagctgtg gacaaagcta acctggatgt catgaaagag

301      cgttccaaca acactccaga tgccaacgtg gccccagagg tgactgtact ctccagaagc

361      cctgtgaacc tgggagagcc caacatcctc atctgtttca ttgacaagtt ctcccctcca

421      gtggtcaatg tcacctggtt ccggaatgga cggcctgtca ccgaaggcgt gtcagagaca

481      gtgtttctcc cgagggacga tcacctcttc cgcaaattcc actatctgac cttcctgccc

541      tccacagatg atttctatga ctgtgaggtg gatcactggg gtttggagga gcctctgcgg

601      aagcactggg agtttgaaga gaaaaccctc ctcccagaaa ctacagagaa tgtcgtgtgt

661      gctcttgggt tgtttgtggg tctggtgggc atcgttgtgg ggattatcct catcatgaag

721      ggtattaaaa aacgcaatgt tgtagaacgc cgacaaggag ccctgtga
Nucleotide sequence in FASTA format (without gaps) MH2-EA*02

Amino acid sequence

1        MATIGALLLR FFFIAVLMSS QKSWAIKEEH TIIQAEFYLL PDKRGEFMFD FDGDEIFHVD

61       IEKSETIWRL EEFAKFASFE AQGALANIAV DKANLDVMKE RSNNTPDANV APEVTVLSRS

121      PVNLGEPNIL ICFIDKFSPP VVNVTWFRNG RPVTEGVSET VFLPRDDHLF RKFHYLTFLP

181      STDDFYDCEV DHWGLEEPLR KHWEFEEKTL LPETTENVVC ALGLFVGLVG IVVGIILIMK

241      GIKKRNVVER RQGAL*
Amino acid sequence in FASTA format (without gap) MH2-EA*02

Legend: