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rainbow trout

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT notes:
  1. (1) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  2. (2) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VVV (3AA)). In-frame DELETION in CYTOPLASMIC-REGION (K23>del(1AA)).
  3. (3) 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  4. (4) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  5. (5) In-frame DELETION in L-REGION (G12-L14>del(3AA)). In-frame DELETION in G-ALPHA1 (Y59-E61>del(3AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  6. (6) 6 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VA (2AA)).
  7. (7) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)).
  8. (8) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  9. (9) In-frame DELETION in L-REGION (G12-L14>del(3AA)). In-frame DELETION in G-ALPHA1 (Y59-E61>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  10. (10) 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VVV (3AA)).
  11. (11) 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  12. (12) 6 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VA (2AA)).
  13. (13) In-frame DELETION in L-REGION (L8>del(1AA) and L13>del(1AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  14. (14) In-frame DELETION in G-ALPHA2 (G14>del(1AA)). 6 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  15. (15) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  16. (16) Partial (5' part of EX1 missing). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)).In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  17. (17) Partial (5' and 3' parts of EX2 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)).
  18. (18) Partial (5' and 3' parts of EX2 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AD (2AA)).
  19. (19) Partial (5' part of EX1 missing). In-frame DELETION in G-ALPHA1 (Y59-E61>del(3AA)).
  20. (20) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  21. (21) Partial (5' part of EX1 missing). 2 amino acids in 3' of G-ALPHA1 are adding due to an alternative DONOR-SPLICE. 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  22. (22) Partial (5' part of EX1 missing). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)).In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VVV (3AA)). In-frame DELETION in CYTOPLASMIC-REGION (K23>del(1AA)).
  23. (23) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  24. (24) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 6 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  25. (25) Partial (5' and 3' parts of EX3 missing).
  26. (26) Partial (5' part of EX1 missing). In-frame DELETION in G-ALPHA1 (E61>del(1AA)). 2 amino acids in 3' of G-ALPHA1 are adding due to an alternative DONOR-SPLICE. In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  27. (27) Partial (5' part of EX1 missing). 6 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VA (2AA)).
  28. (28) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  29. (29) Partial (5' part of EX1 missing). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)).
  30. (30) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)).In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VAV (3AA)). In-frame DELETION in CYTOPLASMIC-REGION (K23>del(1AA)).
  31. (31) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)).In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VVV (3AA)).
  32. (32) In-frame DELETION in L-REGION (g34-c42>del(9nt), G12-L14>del(3AA)). In-frame DELETION in G-ALPHA1 (t169-g177>del(9nt), Y59-E61>del(3AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (c64^g69>ins^gttgctgtt (9nt), 45^46>ins^VAV (3AA)).
  33. (33) Partial (3' part of EX4 missing).
  34. (34) Partial (5' part of EX1 missing).
  35. (35) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)).In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VVV (3AA)). In-frame DELETION in CYTOPLASMIC-REGION (K23>del(1AA)).
  36. (36) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). 11 amino acids in 3' of C-LIKE are missing due to an alternative DONOR-SPLICE. In-frame DELETION at the 5' of CONNECTING-REGION (S2-D4>del(3AA)).In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^VVV (3AA)).
  37. (37) Partial (5' and 3' parts of EX3 missing).
  38. (38) Partial (5' and 3' parts of EX2 missing).
  39. (39) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)).
  40. (40) In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (45^46>ins^A (1AA)).
  41. (41) Partial (5' part of EX1 missing). In-frame INSERTION in the middle of G-ALPHA1 (54A^55>ins^AE (2AA)). In-frame INSERTION in the middle of TRANSMEMBRANE-REGION (15^16>ins^A (1AA)).
  42. (42) Partial (3' part of EX4 missing). In-frame DELETION in L-REGION (G12-L14>del(3AA)). In-frame DELETION in G-ALPHA1 (Y59-E61>del(3AA)).
  43. (43) Presence of a STOP-CODON in the EX7.
  44. (44) Unproductive cDNA due to Change of reading frame (95 nt in 5' of C-LIKE are missing due to an alternative ACCEPTOR-SPLICE).
  45. (45) Alternative splicing B corresponds to an absence of EX1.Partial EX2 (Loss of 5 nucleotides at the beginning of EX2). Partial EX7 (2 amino acids are missing in 3' part).In-frame INSERTION in the middle part of TRANSMEMBRANE-REGION (22^23>ins^VVV(3AA)). In-frame DELETION in CYTOPLASMIC-REGION (S5>del(1AA) and S19-D20>del(2AA)).
  46. (46) In-frame DELETION in TRANSMEMBRANE-REGION (V22>del(1AA)), S19-D20>del(2AA). In-frame INSERTION in CYTOPLASMIC-REGION (6^7>ins^V(1AA)).
  47. (47) Alternative splicing B corresponds to an absence of EX1.Partial EX2 (Loss of 5 nucleotides at the beginning of EX2). Partial EX7 (2 amino acids are missing in 3' part).In-frame DELETION in the middle part of TRANSMEMBRANE-REGION (P11>del(1AA) and V22>del(1AA)). In-frame DELETION in CYTOPLASMIC-REGION K4>del(1AA).
  48. (48) In-frame INSERTION in TRANSMEMBRANE-REGION (22^23>ins^GVV(3AA)). In-frame DELETION in CYTOPLASMIC-REGION (K4>del(1AA))
  49. (49) Alternative splicing B corresponds to an absence of EX1.Partial EX2 (Loss of 5 nucleotides at the beginning of EX2). Partial EX7 (2 amino acids are missing in 3' part).In-frame DELETION in the middle part of TRANSMEMBRANE-REGION (P11>del(1AA) and (W24>del(1AA)). In-frame DELETION in CYTOPLASMIC-REGION (K1>del(1AA)).
  50. (50) In-frame INSERTION in TRANSMEMBRANE-REGION (22^23>ins^VVVVGVVVV(9AA)).
  51. (51) pseudogene due to seven nucleotides deletion and five nucleotides insertion leading to a frameshift in C-LIKE"
  52. (52) In-frame INSERTION in TRANSMEMBRANE-REGION (22^23>ins^VVV(3AA)).
  53. (53) Alternative splicing B corresponds to an absence of EX1 and EX2. Partial EX3 (72 amino acids are missing in 5' part of EX3). In-frame INSERTION in the middle part of TRANSMEMBRANE-REGION (22^23>ins^VVV(3AA)).
  54. (54) Partial EX2 (36 amino acids are missing in 5' part). Partial EX4 (66 amino acids are missing in 3' part of EX4).
  55. (55) Alternative splicing B corresponds to an absence of EX1. In-frame INSERTION in TRANSMEMBRANE-REGION (22^23>ins^VVVVGVVVV(9AA)).
  56. (56) Partial (11 amino acids are missing in 3' part of EX7). In-frame DELETION in TRANSMEMBRANE-REGION (G19>del(1AA)).
  57. (57) Partial (11 amino acids are missing in 3' part of EX7). In-frame DELETION in TRANSMEMBRANE-REGION (V22>del(1AA)). In-frame DELETION in CYTOPLASMIC-REGION (K4>del(1AA)).
  58. (58) Partial (11 amino acids are missing in 3' part of EX7). In-frame DELETION in TRANSMEMBRANE-REGION (V22>del(1AA)).
  59. (59) Partial (11 amino acids are missing in 3' part of EX7)
  60. (60) In-frame DELETION in TRANSMEMBRANE-REGION (V23>del(1AA)).
  61. (61) Partial EX2 ( 10 amino acids are missing in 5' part of EX2 and 8 amino acids are missing in 3' part of EX2).
  62. (62) Partial EX7 (7 amino acids are missing in 3' part of EX7). Alternative splicing B corresponds to an absence of EX8.
  63. (63) According to IMGT functionality definition this sequence is functional but not be found cDNA.
  64. (64) Alternative splicing B corresponds to an absence of EX8. Partial EX7 (41 amino acids are missing in 3' part of EX7).
  65. (65) Alternative splicing B corresponds to an absence of EX8. Partial EX7 (41 amino acids are missing in 3' part of EX7). In-frame DELETION in TRANSMEMBRANE-REGION (V23>del(1AA)).
  66. (66) 5 amino acids in 5' of EX4 are missing due to a STOP-CODON (EX4 is represented by only 15 nucleotides).
  67. (67) Partial (3' part of EX4 missing).
  68. (68) Partial (5' part of EX2 missing and 3' part of EX3 missing).
  69. (69) Partial EX2 missing
  70. (70) Partial (5' part of EX2 missing).
  71. (71) Amino acids that are before the first methionine are considered as 5'UTR.
  72. (72) Partial (5' part of EX2 and 3' part of EX4 missing).
  73. (73) Partial (3' part of EX3 missing).
  74. (74) Partial (5' part of EX2 and 3' part of EX3 missing).
  75. (75) Partial (5' and 3' part of EX2 missing).
IMGT references:
  1. [1] Shiina T.et al; Immunogenetics 56(12):878-893(2005). PMID: 15696305
  2. [2] Shum B.P.et al; Immunogenetics 49(6):479-490(1999). PMID: 10380691
  3. [3] Aoyagi K. Et al; J. Immunol. 168(1):260-273(2002). PMID: 11751970
  4. [4] Kiryu I., et al. Unpublished. 2003.
  5. [5] Kiryu I. et al; Fish Shellfish Immunol. 18(3):243-254(2005). PMID: 15519543
  6. [6] Miller K.M. Et al; Immunogenetics 58(7):571-589(2006. PMID: 16794819
  7. [7] Miller K.M., Withler R.E.; Immunol. Rev. 166:279-293(1998). PMID: 9914919
  8. [8] Shum B.P. Et al; J. Immunol. 166(5):3297-3308(2001). PMID: 11207285
  9. [9] Schill W.B. Unpublished. 2001.
  10. [10] Xia C., Et al; Fish Shellfish Immunol. 12(4):287-301(2002). PMID: 12049167
  11. [11] Xia C., Aoyagi K. et al. Unpublished.
  12. [12] Hansen J.D., et al; J. Immunol. 163(2):774-786(1999). PMID: 10395670
  13. [13] Shum B.P.Unpublished. 1998.
  14. [14] Franche N., et al. Unpublished. 2010.
  15. [15] Hansen J.D. et al. J Immunol. 15;163(2):774-86 (1999 Jul). PMID: 10395670
  16. [16] Hansen J.D. et al; Dev. Comp. Immunol. 20(6):417-425(1996). PMID: 9040984
  17. [17] Shum B.P.et al. Proc. Natl. Acad. Sci. U.S.A. 93(7):2779-2784(1996). PMID: 8610117
  18. [18] Dijkst J.M. et al; Immunogenetics 58(2-3):152-167(2006). PMID: 16518622
  19. [19] Ozaki A.; et al; Fish Pathol. 42(3):131-140(2007)..
  20. [20] Landis E.D. et al; Mol. Immunol. 45(6):1646-1657(2008). PMID: 18187194
  21. [21] Shum B.P.et al; Immunogenetics 54(3):193-199(2002). PMID: 12073148
  22. [22] Kiryu I.; et al. Unpublished. 2004.
  23. [23] Grimholt U. et al. Unpublished. 1999.
  24. [24] Gomez D. et al; Immunogenetics 62(8):531-542(2010). PMID: 20521040
  25. [25] Phillips R.B. et al; Immunogenetics 55(8):561-569(2003). PMID: 14566436
  26. [26] Glamann J.; Scand. J. Immunol. 41(4):365-372(1995). PMID: 7899824
  27. [27] Monzon-Arguello C. et al. Unpublished. 2011.
  28. [28] Aguilar A. et al; J. Mol. Evol. 65(1):34-43(2007). PMID: 17593422
  29. [29] Gomez D.; et al; Aquaculture 318(1-2):15-19(2011).
  30. [30] Miller K.M. et al; Immunogenetics 43(6):337-351(1996). PMID: 8606054
  31. [31] Aguilar A., et al; Mol. Ecol. 15(4):923-937(2006). PMID: 16599957
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