Other MHC entries

IMGT MHC entry from gene to protein for Mus musculus H2-AA

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

H2-AA Gene exon/intron organization
Legend:

Gene table (Locus and genes)

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
MH2-AA*04 K01923 P04228 256aa 1
MH2-AA*05 AK170931 Tr:Q549Q2 243aa 1
MH2-AA*08 BC019721 P14434 256aa 1
MH2-AA*10 AF065910 Tr:Q549Q3 233aa 1
MH2-AA*12 X52643 P23150 254aa 1
MH2-AA*14 K01925 P04227 221aa 1
MH2-AA*16 M11358 P14437 233aa 1
IMGT references:
  1. [1] Carninci P. et al., Meth. Enzymol. 303, 19-44 (1999). PMID: 10349636
  2. [2] Strausberg R.L. et al., Proc. Natl. Acad. Sci. U.S.A. 99, 16899-16903 (2002). PMID: 12477932
  3. [3] Benoist C.O. et al., Cell 34, 169-177 (1983). PMID: 6309407
  4. [4] Landais D. et al., Proc. Natl. Acad. Sci. U.S.A. 82, 2930-2934 (1985). PMID: 2581258
  5. [5] Bishop G.A. et al., Immunogenetics 28, 184-192 (1988). PMID: 3137158
  6. [6] Acha-Orbea H. and Scarpellino L. Immunogenetics 34, 57-59 (1991). PMID: 1855817

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

H2-AA*01: NC_000083(g)

Nucleotide sequence

1        atgccgcgca gcagagctct gattctgggg gtcctcgccc tgaccaccat gctcagcctc

61       tgtggaggtg aagacgacat tgaggccgac cacgtaggca cctatggtat aagtgtatat

121      cagtctcctg gagacattgg ccagtacaca tttgaatttg atggtgatga gttgttctat

181      gtggacttgg ataagaagga gactgtctgg atgcttcctg agtttggcca attggcaagc

241      tttgaccccc aaggtggact gcaaaacata gctgtagtaa aacacaactc gcgagtattg

301      actaagaggt caaattccac cccagctacc aatgaggctc ctcaagcgac tgtgttcccc

361      aagtcccctg tgctgctggg tcagcccaac accctcatct gctttgtgga caacatcttc

421      cctcctgtga tcaacatcac atggctcaga aatagcaagt cagtcgcaga cggtgtttat

481      gagaccagct tcttcgtcaa ccgtgactat tccttccaca agctgtctta tctcaccttc

541      atcccttctg acgatgacat ttatgactgc aaggtggaac actggggcct ggaggagccg

601      gttctgaaac actgggaacc tgagattcca gcccccatgt cagagctgac agagactgtg

661      gtctgtgccc tggggttgtc tgtgggcctt gtgggcatcg tggtgggcac catcttcatc

721      attcaaggcc tgcgatcagg tggcacctcc agacacccag ggcctttatg a
Nucleotide sequence in FASTA format (without gaps) H2-AA*01

Amino acid sequence

1        MPRSRALILG VLALTTMLSL CGGEDDIEAD HVGTYGISVY QSPGDIGQYT FEFDGDELFY

61       VDLDKKETVW MLPEFGQLAS FDPQGGLQNI AVVKHNSRVL TKRSNSTPAT NEAPQATVFP

121      KSPVLLGQPN TLICFVDNIF PPVINITWLR NSKSVADGVY ETSFFVNRDY SFHKLSYLTF

181      IPSDDDIYDC KVEHWGLEEP VLKHWEPEIP APMSELTETV VCALGLSVGL VGIVVGTIFI

241      IQGLRSGGTS RHPGPL*
Amino acid sequence in FASTA format (without gap) H2-AA*01

Legend: