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Other FCGR entries

IMGT RPI entry from gene to protein for Mus musculus FCGR1

Citing IMGT RPI entry for FCGR1

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

FCGR1 Gene exon/intron organization

Legend:

Number of alleles: 7

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
FCGR1*01 F M31314 [1] cDNA
FCGR1*02 AF143171 [2] cDNA
FCGR1*03 AF143180 [2] cDNA
FCGR1*04 AF143181 [2] cDNA
FCGR1*05 AF143185 [2] cDNA
FCGR1*06 AF143186 [2] cDNA
FCGR1*07 AF143187 [2] cDNA

IMGT reference sequences (in FASTA format) for the allele(s): FCGR1*01 to FCGR1*07

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Strain Clone names Accession numbers Molecule type
FCGR1*01 F AKR allele a AF143154[2] cDNA
ALR/Lt allele a AF143155[2]
C57BL/10J allele a AF143156[2]
C57BL/6ByJ allele a AF143157[2]
BALB/cByJ allele a AF143158[2]
C57BLKS/J allele a AF143159[2]
BUB/BnJ allele a AF143160[2]
C57Br/cdJ allele a AF143161[2]
C58/J allele a AF143162[2]
DBA/2J allele a AF143163[2]
HRS/J allele a AF143164[2]
MRL/MpJ allele a AF143165[2]
MRL/MpJ-Faslpr allele a AF143166[2]
NZB/BINJ allele a AF143167[2]
NZO allele a AF143168[2]
PL/J allele a AF143169[2]
ST/bJ allele a AF143170[2]
FCGR1*02 F A/HeJ allele b AF143171[2] cDNA
C3H/HeJ allele b AF143172[2]
CBA/J allele b AF143173[2]
CE/J allele b AF143174[2]
NON/Lt allele b AF143175[2]
NZW/LacJ allele b AF143176[2]
SJL/J allele b AF143177[2]
SWR/J allele b AF143178[2]
129/J allele b AF143179[2]
FCGR1*03 F CAST/Ei (Mus m. castaneus) allele c AF143180[2] cDNA
FCGR1*04 F ABH (Biozzi) allele d AF143181[2] cDNA
NOD/Lt allele d AF143182[2]
NOR/Lt allele d AF143183[2]
ALS/Lt allele d AF143184[2]
(2) X70980[3]
FCGR1*05 F SPRET/Ei (Mus spretus) allele e AF143185[2] cDNA
FCGR1*06 F MOLF/Ei (Mus m. molossinus) allele f AF143186[2] cDNA
FCGR1*07 F RF/J allele g AF14317 [2] cDNA
PERA/Ei (Mus m. domesticus) allele g AF14318 [2]

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
FCGR1*01 M31314 SW: P26151 404 aa
IMGT notes:
  1. (1) The intron length between EX3 and EX4 is shown between parentheses because it needs to be confirmed (a gap is still present in NT_080250(26/08/2004)).
  2. (2) Congenic NOD mouse strain that contains a segment of chromosome 3 from the diabetes-resistant mouse strain B6.PL-Thy-1a.
IMGT references:
  1. [1] Sears D.W. et al, J. Immunology, 144, 373-378 (1990). PMID: 2136886
  2. [2] Gavin A.L. et al, Immunogenetics, 51, 206-201 (2000). PMID: 10752630
  3. [3] Prins J.B. et al, Science, 260 (5108), 695-698 (1993). PMID: 8480181

Genomic sequence

Genomic sequence from M31314

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

FCGR1*01: M31314(g)

Nucleotide sequence

1        atgattctta ccagctttgg agatgacatg tggcttctaa caactctgct actttgggtt

61       ccagtcggtg gggaagtggt taatgccacc aaggctgtga tcaccttgca gcctccatgg

121      gtcagtattt tccagaagga aaatgtcact ttatggtgtg aggggcctca cctgcctgga

181      gacagttcca cacaatggtt tatcaacgga acagccgttc agatctccac gcctagttat

241      agcatcccag aggccagttt tcaggacagt ggcgaataca ggtgtcagat aggttcctca

301      atgccaagtg accctgtgca gttgcaaatc cacaatgatt ggctgctact ccaggcctcc

361      cgcagagtcc tcacagaagg agaacccctg gccttgaggt gtcacggatg gaagaataaa

421      ctggtgtaca atgtggtttt ctatagaaat ggaaaatcct ttcagttttc ttcagattcg

481      gaggtcgcca ttctgaaaac caacctgagt cacagcggca tctaccactg ctcaggcacg

541      ggaagacacc gctacacatc tgcaggagtg tccatcacgg tgaaagagct gtttaccacg

601      ccagtgctga gagcatccgt gtcatctccc ttcccggagg ggagtctggt caccctgaac

661      tgtgagacga atttgctcct gcagagaccc ggcttacagc ttcacttctc cttctacgtg

721      ggcagcaaga tcctggagta caggaacaca tcctcagagt accatatagc aagggcggaa

781      agagaagatg ctggattcta ctggtgtgag gtagccacgg aggacagcag tgtccttaag

841      cgcagccctg agttggagct ccaagtgctt ggtccccagt catcagctcc tgtctggttt

901      cacatcctgt tttatctgtc agtgggaata atgttttcgt tgaacacggt tctctatgtg

961      aaaatacaca ggctgcagag agagaagaaa tacaacttag aagtcccttt ggtttctgag

1021     cagggaaaga aagcaaattc ctttcagcaa gttagaagcg atggcgtgta tgaagaagta

1081     acagccactg cgagccagac cacaccaaaa gaagcgcccg atggacctcg aagctcagtg

1141     ggtgactgtg gacccgagca gcctgaaccc cttcctccca gtgacagtac tggggcacaa

1201     acttcccaaa gttga
Nucleotide sequence in FASTA format (without gaps) FCGR1*01

Amino acid sequence

1        MILTSFGDDM WLLTTLLLWV PVGGEVVNAT KAVITLQPPW VSIFQKENVT LWCEGPHLPG

61       DSSTQWFING TAVQISTPSY SIPEASFQDS GEYRCQIGSS MPSDPVQLQI HNDWLLLQAS

121      RRVLTEGEPL ALRCHGWKNK LVYNVVFYRN GKSFQFSSDS EVAILKTNLS HSGIYHCSGT

181      GRHRYTSAGV SITVKELFTT PVLRASVSSP FPEGSLVTLN CETNLLLQRP GLQLHFSFYV

241      GSKILEYRNT SSEYHIARAE REDAGFYWCE VATEDSSVLK RSPELELQVL GPQSSAPVWF

301      HILFYLSVGI MFSLNTVLYV KIHRLQREKK YNLEVPLVSE QGKKANSFQQ VRSDGVYEEV

361      TATASQTTPK EAPDGPRSSV GDCGPEQPEP LPPSDSTGAQ TSQS*
Amino acid sequence in FASTA format (without gap) FCGR1*01

Legend: