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Alignment of alleles: Ring-tailed lemur (Lemur catta) IGHD overview

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.

Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

                                                                  5'->3'                                                     3'<-5'
                                                            (direct orientation)                                       (inverted orientation)
                                               1        10        20        30        40                   1        10        20        30        40    
                                               |........|.........|.........|.........|.....               |........|.........|.........|.........|.....

                                                G  T  G  G  T                                                V  V  P  P  V    
                                                 E  L  G  E  Q                                                L  F  P  Q  F   
                                                  N  W  G  N  N                                                C  S  P  S  S  
  IMGT000097 IGHD1-3*01  F   D-REGION gDNA     ggaactgggggaacaac                                           gttgttcccccagttcc

                                                G  T  G  G  T                                                V  V  P  P  V    
                                                 E  L  G  E  Q                                                L  F  P  Q  F   
                                                  N  W  G  N  N                                                C  S  P  S  S  
  IMGT000097 IGHD1-7*01  F   D-REGION gDNA     ggaactgggggaacaac                                           gttgttcccccagttcc

                                                *  V  L  *  *  W  C  L  L  W                                 A  I  V  N  T  I  T  I  V  L   
                                                 E  Y  Y  S  D  G  V  Y  Y  G                                 P  *  *  T  P  S  L  *  Y  S  
                                                  S  T  I  V  M  V  F  T  M                                    H  S  K  H  H  H  Y  S  T    
  IMGT000097 IGHD2-1*01  F   D-REGION gDNA     tgagtactatagtgatggtgtttactatggc                             gccatagtaaacaccatcactatagtactca

                                                V  Y  S  G  V  Y  G  Y                                       V  *  P  Y  T  P  L  Y    
                                                 Y  I  V  G  Y  T  V  I                                       Y  N  R  I  P  H  Y  I   
                                                  I  *  W  G  I  R  L  Y                                       I  T  V  Y  P  T  I  Y  
  IMGT000097 IGHD3-2*01  ORF D-REGION gDNA     gtatatagtggggtatacggttatac                                  gtataaccgtataccccactatatac

                                                V  Y  S  G  V  Y  G  Y                                       V  *  P  Y  T  P  L  Y    
                                                 Y  I  V  G  Y  M  V  I                                       Y  N  H  I  P  H  Y  I   
                                                  I  *  W  G  I  W  L  Y                                       I  T  I  Y  P  T  I  Y  
  IMGT000097 IGHD3-4*01  ORF D-REGION gDNA     gtatatagtggggtatatggttatac                                  gtataaccatataccccactatatac

                                                V  E  T  E  Y  D  Y  D  L  G  S  I  V  S  T                  G  A  D  N  A  P  *  V  V  V  V  F  S  L  N  
                                                 L  R  L  N  T  T  T  T  *  G  A  L  S  A                     V  L  T  M  L  P  R  S  *  S  Y  S  V  S    
                                                  *  D  *  I  R  L  R  P  R  E  H  C  Q  H                     C  *  Q  C  S  L  G  R  S  R  I  Q  S  Q   
  IMGT000097 IGHD3-8*01  F   D-REGION gDNA     gttgagactgaatacgactacgacctagggagcattgtcagcacc               ggtgctgacaatgctccctaggtcgtagtcgtattcagtctcaac

                                                S  T  G  L  A  A                                             V  A  A  S  P  V    
                                                 L  L  D  *  Q  L                                             *  L  L  V  Q  *   
                                                  Y  W  T  S  S  Y                                             S  C  *  S  S  R  
  IMGT000097 IGHD4-10*01 ORF D-REGION gDNA     tctactggactagcagctac                                        gtagctgctagtccagtaga

                                                V  H  I  A  T  G                                             V  P  V  A  I  W    
                                                 S  I  *  L  R  G                                             S  P  *  L  Y  G   
                                                  P  Y  S  Y  G  D                                             P  R  S  Y  M  D  
  IMGT000097 IGHD5-5*01  ORF D-REGION gDNA     gtccatatagctacggggac                                        gtccccgtagctatatggac

                                                Y  S  S  G  W  A                                             G  P  S  A  T  V  
                                                 T  V  A  D  G                                                A  H  P  L  L    
                                                  Q  *  R  M  G                                                P  I  R  Y  C   
  IMGT000097 IGHD6-6*01  ORF D-REGION gDNA     tacagtagcggatgggcc                                          ggcccatccgctactgta

                                                G  I  I  T  A  G  G  T                                       S  P  T  S  C  Y  N  T  
                                                 V  L  *  Q  L  V  G                                          V  P  P  A  V  I  I    
                                                  Y  Y  N  S  W  W  D                                          S  H  Q  L  L  *  Y   
  IMGT000097 IGHD6-9*01  ORF D-REGION gDNA     ggtattataacagctggtgggact                                    agtcccaccagctgttataatacc

                                                G  I  T  V  A  G  T                                          S  T  S  Y  R  N  T  
                                                 V  L  R  *  L  V                                             V  P  A  T  V  I    
                                                  Y  Y  G  S  W  Y                                             Y  Q  L  P  *  Y   
  IMGT000097 IGHD6-11*01 ORF D-REGION gDNA     ggtattacggtagctggtact                                       agtaccagctaccgtaatacc



This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).

Turkan Samadova