IMGT Repertoire (IG and TR)


Locus gene order: house mouse (Mus musculus) strain C57BL/6J IGH locus

Relative position (order) of a gene, in a locus from the 5' end of a locus to its 3' end.

House mouse (Mus musculus) strain C57BL/6J IGH locus

IMGT gene name Functionality IMGT gene order
IMGT locus ID : Musmus_IGH_1
Genome assembly: GRCm38.p6
Strain: C57BL/6J
IMGT gene orientation in locus Copy Number Variation (CNV) Haplotypes
IGHV1-86 P 1 direct
IGHV1-85 F 2 direct
IGHV1-84 F 3 direct
IGHV1-83 P 4 direct
IGHV1-82 F 5 direct
IGHV8-18 P 6 direct
IGHV1-81 F 7 direct
IGHV1-80 F 8 direct
IGHV1-79 P 9 direct
IGHV8-17 P 10 direct
IGHV1-78 F 11 direct
IGHV1-77 F 12 direct
IGHV8-16 P 13 direct
IGHV1-76 F 14 direct
IGHV8-15 P 15 direct
IGHV1-75 F 16 direct
IGHV8-14 P 17 direct
IGHV1-74 F 18 direct
IGHV1-73 P 19 direct
IGHV8-13 P 20 direct
IGHV1-72 F 21 direct
IGHV1-71 F 22 direct
IGHV(I)-2 P 23 direct
IGHV1-70 P 24 direct
IGHV8-12 F 25 direct
IGHV1-69 F 26 direct
IGHV1-68 P 27 direct
IGHV1-67 P 28 direct
IGHV1-66 F 29 direct
IGHV8-11 F 30 direct
IGHV1-65 P 31 direct
IGHV8-10 P 32 direct
IGHV1-64 F 33 direct
IGHV1-63 F 34 direct
IGHV8-9 ORF 35 direct
IGHV1-62-3 ORF 36 direct
IGHV1-62-2 F 37 direct
IGHV(I)-1 P 38 direct
IGHV8-8-1 P 39 direct
IGHV1-62-1 F 40 direct
IGHV1-62 P 41 direct
IGHV1-61 F 42 direct
IGHV1-60 P 43 direct
IGHV1-59 F 44 direct
IGHV1-58 F 45 direct
IGHV8-8 F 46 direct
IGHV1-57 P 47 direct
IGHV8-7 P 48 direct
IGHV1-56 F 49 direct
IGHV1-55 F 50 direct
IGHV1-54 F 51 direct
IGHV8-6 F 52 direct
IGHV1-53 F 53 direct
IGHV1-52 F 54 direct
IGHV1-51 P 55 direct
IGHV1-50 F 56 direct
IGHV8-5 ORF 57 direct
IGHV1-49 F 58 direct
IGHV1-48 P 59 direct
IGHV8-4 ORF 60 direct
IGHV8-3 P 61 direct
IGHV1-47 F 62 direct
IGHV1-46 P 63 direct
IGHV1-45 P 64 direct
IGHV1-44 P 65 direct
IGHV1-43 F 66 direct
IGHV1-42 F 67 direct
IGHV1-41 P 68 direct
IGHV1-40 P 69 direct
IGHV1-39 F 70 direct
IGHV1-38 P 71 direct
IGHV1-37 F 72 direct
IGHV1-36 F 73 direct
IGHV1-35 P 74 direct
IGHV1-34 F 75 direct
IGHV1-33 P 76 direct
IGHV1-32 P 77 direct
IGHV1-31 F 78 direct
IGHV1-30 P 79 direct
IGHV1-29 P 80 direct
IGHV1-28 P 81 direct
IGHV1-27 P 82 direct
IGHV1-26 F 83 direct
IGHV1-25 P 84 direct
IGHV1-24 ORF 85 direct
IGHV1-23 ORF 86 direct
IGHV1-22 F 87 direct
IGHV1-21 P 88 direct
IGHV1-21-1 P 89 direct
IGHV1-20 F 90 direct
IGHV1-19 F 91 direct
IGHV1-19-1 P 92 direct
IGHV1-18 F 93 direct
IGHV1-17 P 94 direct
IGHV1-17-1 P 95 direct
IGHV1-16 ORF 96 direct
IGHV1-15 F 97 direct
IGHV1-14 P 98 direct
IGHV1-13 P 99 direct
IGHV1-12 F 100 direct
IGHV1-11 F 101 direct
IGHV1-10 P 102 direct
IGHV1-9 F 103 direct
IGHV15-2 F 104 direct
IGHV1-8 P 105 direct
IGHV10-4 P 106 direct
IGHV1-7 F 107 direct
IGHV1-6 P 108 direct
IGHV10-3 F 109 direct
IGHV1-5 F 110 direct
IGHV10-2 P 111 direct
IGHV1-4 F 112 direct
IGHV1-3 P 113 direct
IGHV10-1 F 114 direct
IGHV1-2 P 115 direct
IGHV8-2 ORF 116 direct
IGHV6-7 F 117 direct
IGHV6-6 F 118 direct
IGHV6-5 ORF 119 direct
IGHV6-4 ORF 120 direct
IGHV6-3 F 121 direct
IGHV12-3 F 122 direct
IGHV13-2 F 123 direct
IGHV1-1 P 124 direct
IGHV8-1 P 125 direct
IGHV3-8 F 126 direct
IGHV5-21 P 127 direct
IGHV3-7 P 128 direct
IGHV9-4 F 129 direct
IGHV3-6 F 130 direct
IGHV(III)-13 P 131 direct
IGHV13-1 P 132 direct
IGHV3-5 F 133 direct
IGHV3-4 F 134 direct
IGHV7-4 F 135 direct
IGHV3-3 F 136 direct
IGHV14-4 F 137 direct
IGHV15-1 P 138 direct
IGHV7-3 F 139 direct
IGHV9-3 F 140 direct
IGHV12-2 P 141 direct
IGHV9-2 F 142 direct
IGHV12-1 P 143 direct
IGHV9-1 F 144 direct
IGHV6-2 P 145 direct
IGHV16-1 ORF 146 direct
IGHV(III)-7 P 147 direct
IGHV14-3 F 148 direct
IGHV11-2 F 149 direct
IGHV(III)-6 P 150 direct
IGHV3-2 P 151 direct
IGHV4-2 P 152 direct
IGHV14-2 F 153 direct
IGHV11-1 F 154 direct
IGHV(III)-5 P 155 direct
IGHV3-1 F 156 direct
IGHV4-1 F 157 direct
IGHV14-1 F 158 direct
IGHV7-2 ORF 159 direct
IGHV7-1 F 160 direct
IGHV5-19 P 161 direct
IGHV2-9 F 162 direct
IGHV2-8 P 163 direct
IGHV5-18 P 164 direct
IGHV5-17 F 165 direct
IGHV5-16 F 166 direct
IGHV5-15 F 167 direct
IGHV2-7 F 168 direct
IGHV(III)-4 P 169 direct
IGHV2-6-8 F 170 direct
IGHV(III)-11 P 171 direct
IGHV(III)-10 P 172 direct
IGHV(III)-12 P 173 direct
IGHV(III)-14 P 174 direct
IGHV2-9-1 F 175 direct
IGHV(III)-9 P 176 direct
IGHV5-12-4 F 177 direct
IGHV5-7-6 P 178 direct
IGHV5-9-1 F 179 direct
IGHV(III)-1 P 180 direct
IGHV(III)-8 P 181 direct
IGHV2-6 F 182 direct
IGHV5-13 P 183 direct
IGHV5-12 F 184 direct
IGHV5-11 P 185 direct
IGHV2-5 F 186 direct
IGHV(II)-2 P 187 direct
IGHV5-10 P 188 direct
IGHV5-9 F 189 direct
IGHV5-8 P 190 direct
IGHV2-4 F 191 direct
IGHV(II)-1 P 192 direct
IGHV5-7 P 193 direct
IGHV5-6 F 194 direct
IGHV5-5 P 195 direct
IGHV2-3 F 196 direct
IGHV6-1 P 197 direct
IGHV5-4 F 198 direct
IGHV5-3 P 199 direct
IGHV2-2 F 200 direct
IGHV5-2 F 201 direct
IGHV2-1 P 202 direct
IGHV5-1 P 203 direct
IGHD1-3 F 204 direct
IGHD5-1 P 205 direct
IGHD3-1 F 206 direct
IGHD1-1 F 207 direct
IGHD5-1-1 ORF 208 direct
IGHD6-1 F 209 direct
IGHD2-3 F 210 direct
IGHD6-2 F 211 direct
IGHD2-4 F 212 direct
IGHD5-2 ORF 213 direct
IGHD6-2-1 F 214 direct
IGHD2-5 F 215 direct
IGHD5-3 ORF 216 direct
IGHD6-3 F 217 direct
IGHD2-6 F 218 direct
IGHD5-4 ORF 219 direct
IGHD6-4 F 220 direct
IGHD2-7 F 221 direct
IGHD5-5 ORF 222 direct
IGHD6-5 ORF 223 direct
IGHD2-8 F 224 direct
IGHD5-6 ORF 225 direct
IGHD3-2 F 226 direct
IGHD4-1 F 227 direct
IGHJ1 F 228 direct
IGHJ2 F 229 direct
IGHJ3 F 230 direct
IGHJ4 F 231 direct
IGHM F 232 direct
IGHD F 233 direct
IGHG3 F 234 direct
IGHG1 F 235 direct
IGHG2B F 236 direct
IGHG2C F 237 direct
IGHE F 238 direct
IGHA F 239 direct
Created:
02/12/2024
Last updated:
18/12/2024
Authors:
Anna Tran, Ifigeneia Sideri