IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Isolate		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	IGKJ1	IGKJ1*01	F			13	+	+		17573	CM000299.1		NW_001099007	[1]	complement(69449..69525)		AG07107	CM014348.1	IMGT000063	MAP	1342073..1342149
	IGKJ2	IGKJ2*01	F			13	+	+		17573	CM000299.1		NW_001099007	[1]	complement(69089..69166)		AG07107	CM014348.1	IMGT000063	MAP	1342432..1342509
	IGKJ3	IGKJ3*01	F			13	+	+		17573	CM000299.1		NW_001099007	[1]	complement(68781..68856)		AG07107	CM014348.1	IMGT000063	MAP	1342742..1342817
	IGKJ4	IGKJ4*01	F			13	+	+		17573	CM000299.1		NW_001099007	[1]	complement(68449..68524)		AG07107	CM014348.1	IMGT000063	MAP	1343074..1343149
	IGKJ5	IGKJ5*01	F	(1)		13				17573	CM000299.1		NW_001099007	[1]	complement(68135..68207)		AG07107	CM014348.1	IMGT000063	MAP	1343391..1343463

MAP: Mapped reference sequences.

IMGT notes:

(1) unexpected J-SPACER length, however this J-GENE has been found rearranged

IMGT references:

[1] Gibbs R.A. et al., Science 316 (5822), 222-234 (2007). PMID:17431167

More information:

See also (IMGT Scientific chart):

Created:: 24/09/2014
Last updated:: 22/09/2023
Authors:: Morgane Bertignac, Géraldine Folch, Gérard Lefranc, Marie-Paule Lefranc and Sofia Kossida.

IMGT Repertoire (IG and TR)

Gene table: Rhesus monkey (Macaca mulatta) IGKJ